Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMXYH_RS03020 Genome accession   NZ_CP180479
Coordinates   643842..644906 (+) Length   354 a.a.
NCBI ID   WP_129439160.1    Uniprot ID   A0AAJ5JMW4
Organism   Pseudomonas sp. ZB1P45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638842..649906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYH_RS03010 - 639672..640940 (+) 1269 WP_033055361.1 malic enzyme-like NAD(P)-binding protein -
  ACMXYH_RS03015 - 641182..643623 (-) 2442 WP_415767649.1 penicillin-binding protein 1A -
  ACMXYH_RS03020 comM 643842..644906 (+) 1065 WP_129439160.1 pilus assembly protein PilM Machinery gene
  ACMXYH_RS03025 - 644906..645472 (+) 567 WP_134419670.1 PilN domain-containing protein -
  ACMXYH_RS03030 pilO 645469..646092 (+) 624 WP_415766252.1 type 4a pilus biogenesis protein PilO -
  ACMXYH_RS03035 - 646089..646616 (+) 528 WP_415766254.1 pilus assembly protein PilP -
  ACMXYH_RS03040 pilQ 646630..648720 (+) 2091 WP_415766255.1 type IV pilus secretin PilQ Machinery gene
  ACMXYH_RS03045 aroK 648725..649243 (+) 519 WP_010464421.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38220.75 Da        Isoelectric Point: 4.7373

>NTDB_id=1096028 ACMXYH_RS03020 WP_129439160.1 643842..644906(+) (comM) [Pseudomonas sp. ZB1P45]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPTNAVVEKNIAELEGVGQALARVLLKARTNLKNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVNVLLAACRKENVEVREAVLAL
AGLTARVVDVEAYALERCYGLLASQLAASQERLTVAVVDIGATMTTLSVLHQGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMTLGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1096028 ACMXYH_RS03020 WP_129439160.1 643842..644906(+) (comM) [Pseudomonas sp. ZB1P45]
GTGCTAGGACTCTTCAATAAAAAGGCCAACACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTCAAGCTTCTGGAGCT
AAGCCGCCAAGGCGACCGCTATCGGGTCGAGGCCTATGCGGTGGAACCTTTGCCCACCAACGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTAGGGCAGGCACTCGCGCGCGTGCTGCTCAAGGCCAGAACCAACCTCAAGAACGTCGCCGTG
GCCGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGAAATGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTATCCATTGGACGAAGTGGCCATCGACTTTGAGGTCCAGGGCGTTTCTGCGC
GCAACCCCGAGCGAGTCAATGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTGCGGGAAGCGGTCCTGGCCCTG
GCCGGCCTGACAGCCCGCGTGGTCGACGTCGAGGCCTATGCGCTGGAGCGTTGCTACGGATTGCTGGCGAGCCAACTGGC
TGCTTCTCAGGAGCGTCTGACGGTAGCGGTGGTCGATATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACCAGGGGC
GGATCATCTACACCCGCGAACAATTGTTCGGCGGTCGTCAGCTGACGGAGGAAATCCAGCGACGTTATGGCCTGACCCTT
GAACAGGCGGGGCTGGCGAAGAAACAGGGTGGTTTGCCGGACGATTACGTCAGCGAGGTGTTGCAGCCGTTTCGCGATGC
GCTGGTGCAGCAGGTGTCGCGTTCATTGCAGTTTTTCTTCGCCTCCGGTCAGTACAACTCGGTTGATCACATTCTGCTGG
CCGGCGGTACCGCGTCGGTCCCGGGGCTTGATCGGTTGATCGAGCAACGATTGGGTACACCAACGCAAGTGGCCAACCCA
TTCTCCGACATGACCTTGGGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGCGATGCGCCGGCACTGATGATCGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.062

100

0.571
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489

Multiple sequence alignment