Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMYQ1_RS01840 Genome accession   NZ_CP180478
Coordinates   425072..426598 (-) Length   508 a.a.
NCBI ID   WP_105250475.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain XWfb1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 420072..431598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ1_RS01815 (ACMYQ1_01815) prpB 420329..421207 (-) 879 WP_006084450.1 methylisocitrate lyase -
  ACMYQ1_RS01820 (ACMYQ1_01820) - 421260..422027 (-) 768 WP_006084449.1 GntR family transcriptional regulator -
  ACMYQ1_RS01825 (ACMYQ1_01825) - 422351..422926 (+) 576 WP_415775714.1 hypothetical protein -
  ACMYQ1_RS01830 (ACMYQ1_01830) - 423105..424049 (-) 945 WP_415775715.1 acyltransferase -
  ACMYQ1_RS01835 (ACMYQ1_01835) - 424063..424959 (-) 897 WP_105250476.1 acyltransferase -
  ACMYQ1_RS01840 (ACMYQ1_01840) comM 425072..426598 (-) 1527 WP_105250475.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMYQ1_RS01845 (ACMYQ1_01845) - 426815..427963 (+) 1149 WP_415776424.1 DUF1963 domain-containing protein -
  ACMYQ1_RS01850 (ACMYQ1_01850) - 428657..429688 (+) 1032 WP_415775716.1 ABC transporter substrate-binding protein -
  ACMYQ1_RS01855 (ACMYQ1_01855) - 429731..431515 (+) 1785 WP_415776425.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55387.75 Da        Isoelectric Point: 8.1130

>NTDB_id=1096001 ACMYQ1_RS01840 WP_105250475.1 425072..426598(-) (comM) [Shewanella oncorhynchi strain XWfb1]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPINSLKNIEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLVLPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWVSQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDLDSHHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1096001 ACMYQ1_RS01840 WP_105250475.1 425072..426598(-) (comM) [Shewanella oncorhynchi strain XWfb1]
ATGGCGATAGCCTGTGTCAATACCCGAGCCAGTTGTGGGGTTGAAGCTCCACAAGTCACAGTTGAAGTGCATCTCAGCAA
CGGCTTACCAGCATTTAATCTTGTAGGCTTACCCGAAGCTTCGGTAAAAGAAGCCCGTGAGCGAGTACGCAGTGCCTTGA
TCAATGCGGGATTCGAGTTTCCGATGCGGCGGATAACCGTCAATCTCGCGCCAGCTGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATCGCCGTGGGCATATTGGCCGCTTCGGAACAGATTCCCATTAACAGTTTAAAAAATATCGAGTTTGT
CGGCGAGCTGGCACTGTCTGGGCACATACGTTACTGCCAAGGGTTATTGCCCGCGATTATCGCGGCGAAGCGCCAAGACC
ATACCTTGGTCTTACCGCTAGATAACCGCCACGATGCCGAGCTAGTCGGCTATCCCAATGTGTTATTTGGTTCGCATCTG
CAAAGTCTAGCCGCGTATTTACAAGGGCAAAACCAACTGCCCACACTGGCGCCACAGTTAGAATGGGTAAGCCAAGAGAC
ACCCGAGTCCCATACTTGCCTGAGCGATGTAATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGTA
ACCACAACCTCTTGATGCTAGGCCCGCCGGGTACAGGCAAGACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCG
CTCAATTATGAGGAAGCGTTAGAAGTGGCGGCAATTCATTCCGTTGCTGGACTCGACATTAAACCGCAGCATTTTTTACA
GCGACCATTTAGGGCGCCGCACCACACGAGTTCTTCGATCTCCCTCGTGGGCGGTGGCAGTATCCCAAAACCTGGGGAGA
TCTCCCTCGCCCATCGCGGTGTATTATTCTTGGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAA
CCGATGGAAACCGGCGAAGTGGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGATTTCAATTAATCGCAGC
GATGAATCCTAGCCCTAGTGGCGACTTGGATAGCCATCATAGATCCAGCCCTGAACAAATCCAACGTTACCTTTCGCGGC
TTTCAGGTCCGTTTCTCGATCGTTTCGACTTGACCATAGAAGTGCCCAAACTTCCCGCGGGCACCTTGACTCAAGCCGCG
CCGCAGACAGAAACCAGCCAAGATATCGCCAAACGAGTGAAGCTGGCGCGTGAGCTACAACTCGCCCGTGCTGGTGTGCT
CAATAGCGAACTTACAGGGAAACAATTGAAACGCTTCAGCGGGCTCAGTGATGCTGATTTAGTATTTTTGGAGCAAAGCG
TGGTGAAGCTTGGCCTTTCGGTTCGCAGTTTTCATCGTATACAAAGAGTCGCCCGCACTATCGCCGATCTTGAACAAGCA
CCTAATACCGAACGCCGTCATCTTGCCCAAGCACTGGGTTATCGTGCTATGGATAGGTTGCTAGCACGACTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.255

100

0.575
  comM Haemophilus influenzae Rd KW20

56.496

100

0.565
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.796

100

0.559
  comM Legionella pneumophila str. Paris

46.365

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.347

97.638

0.423

Multiple sequence alignment