Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMXKM_RS07555 | Genome accession | NZ_CP180475 |
| Coordinates | 1609850..1610293 (+) | Length | 147 a.a. |
| NCBI ID | WP_006248858.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 200011 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1607631..1660107 | 1609850..1610293 | within | 0 |
Gene organization within MGE regions
Location: 1607631..1660107
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMXKM_RS07545 | - | 1608260..1609018 (+) | 759 | WP_230268913.1 | PFL_4669 family integrating conjugative element protein | - |
| ACMXKM_RS07550 | - | 1609027..1609536 (+) | 510 | WP_230268914.1 | DUF3158 family protein | - |
| ACMXKM_RS07555 | ssb | 1609850..1610293 (+) | 444 | WP_006248858.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMXKM_RS07560 | - | 1610434..1610829 (+) | 396 | WP_230268915.1 | hypothetical protein | - |
| ACMXKM_RS07565 | - | 1610795..1611562 (-) | 768 | WP_230268916.1 | hypothetical protein | - |
| ACMXKM_RS07570 | - | 1611680..1612198 (+) | 519 | WP_230268917.1 | hemophilus-specific protein | - |
| ACMXKM_RS07575 | - | 1612358..1614409 (+) | 2052 | WP_230268918.1 | DNA topoisomerase III | - |
| ACMXKM_RS07580 | - | 1615227..1615667 (+) | 441 | WP_281130442.1 | STY4534 family ICE replication protein | - |
| ACMXKM_RS07585 | - | 1615774..1616421 (+) | 648 | WP_230268919.1 | DUF3560 domain-containing protein | - |
| ACMXKM_RS07590 | - | 1616444..1616851 (+) | 408 | WP_230268920.1 | heme utilization protein | - |
| ACMXKM_RS07595 | - | 1616931..1617293 (+) | 363 | WP_230268921.1 | hypothetical protein | - |
| ACMXKM_RS07600 | - | 1617406..1617666 (+) | 261 | WP_230268922.1 | hypothetical protein | - |
| ACMXKM_RS07605 | - | 1617825..1618454 (+) | 630 | WP_230268923.1 | hypothetical protein | - |
| ACMXKM_RS07610 | - | 1618454..1619227 (+) | 774 | WP_326845031.1 | TIGR03759 family integrating conjugative element protein | - |
| ACMXKM_RS07615 | - | 1619206..1619976 (+) | 771 | WP_230268925.1 | lytic transglycosylase domain-containing protein | - |
| ACMXKM_RS07620 | - | 1619979..1620485 (+) | 507 | WP_012340834.1 | integrating conjugative element protein | - |
| ACMXKM_RS07625 | traD | 1620485..1622689 (+) | 2205 | WP_230268926.1 | type IV conjugative transfer system coupling protein TraD | - |
| ACMXKM_RS07630 | - | 1622682..1623035 (+) | 354 | WP_230268927.1 | hemophilus-specific protein | - |
| ACMXKM_RS07635 | - | 1623032..1623727 (+) | 696 | WP_230268928.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| ACMXKM_RS07640 | - | 1623759..1624130 (-) | 372 | WP_230268929.1 | hypothetical protein | - |
| ACMXKM_RS07645 | - | 1624329..1624655 (+) | 327 | WP_230268930.1 | RAQPRD family integrative conjugative element protein | - |
| ACMXKM_RS07650 | - | 1624655..1624888 (+) | 234 | WP_014325829.1 | DUF3262 family protein | - |
| ACMXKM_RS07655 | - | 1624903..1625292 (+) | 390 | WP_006248894.1 | DUF2976 domain-containing protein | - |
| ACMXKM_RS07660 | - | 1625315..1625680 (+) | 366 | WP_230268931.1 | TIGR03750 family conjugal transfer protein | - |
| ACMXKM_RS07665 | - | 1625684..1626328 (+) | 645 | WP_230268932.1 | PFL_4703 family integrating conjugative element protein | - |
| ACMXKM_RS07670 | - | 1626328..1627212 (+) | 885 | WP_230268933.1 | TIGR03749 family integrating conjugative element protein | - |
| ACMXKM_RS07675 | - | 1627224..1628678 (+) | 1455 | WP_281130443.1 | TIGR03752 family integrating conjugative element protein | - |
| ACMXKM_RS07680 | - | 1628691..1629089 (+) | 399 | WP_230268935.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| ACMXKM_RS07685 | - | 1629089..1631929 (+) | 2841 | WP_415759240.1 | conjugative transfer ATPase | - |
| ACMXKM_RS07690 | - | 1631929..1632357 (+) | 429 | WP_230268937.1 | hypothetical protein | - |
| ACMXKM_RS07695 | - | 1632347..1632664 (+) | 318 | WP_230268938.1 | hemophilus-specific protein | - |
| ACMXKM_RS07700 | - | 1632675..1634147 (+) | 1473 | WP_230268939.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ACMXKM_RS07705 | - | 1634174..1634530 (-) | 357 | WP_230268940.1 | hypothetical protein | - |
| ACMXKM_RS07710 | - | 1634655..1635077 (-) | 423 | WP_230268941.1 | hypothetical protein | - |
| ACMXKM_RS07715 | - | 1635099..1637111 (-) | 2013 | WP_230268942.1 | integrating conjugative element protein | - |
| ACMXKM_RS07720 | - | 1637129..1638070 (-) | 942 | WP_230268943.1 | TIGR03756 family integrating conjugative element protein | - |
| ACMXKM_RS07725 | - | 1638067..1638510 (-) | 444 | WP_230268944.1 | TIGR03757 family integrating conjugative element protein | - |
| ACMXKM_RS07730 | - | 1638883..1639236 (+) | 354 | WP_230268945.1 | hypothetical protein | - |
| ACMXKM_RS07735 | - | 1639309..1639554 (+) | 246 | WP_230268946.1 | hemophilus-specific protein | - |
| ACMXKM_RS07740 | - | 1639612..1639737 (+) | 126 | WP_268259448.1 | hypothetical protein | - |
| ACMXKM_RS07745 | - | 1639732..1641042 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| ACMXKM_RS07750 | - | 1641042..1641278 (-) | 237 | WP_230294061.1 | hypothetical protein | - |
| ACMXKM_RS07755 | - | 1641385..1641573 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| ACMXKM_RS07760 | tetR(Y) | 1641747..1642370 (-) | 624 | WP_011931118.1 | tetracycline resistance transcriptional repressor TetR(Y) | - |
| ACMXKM_RS07765 | tet(Y) | 1642453..1643628 (+) | 1176 | WP_011931119.1 | tetracycline efflux MFS transporter Tet(Y) | - |
| ACMXKM_RS07770 | - | 1643644..1643910 (-) | 267 | WP_052928020.1 | hypothetical protein | - |
| ACMXKM_RS07775 | - | 1644078..1644425 (-) | 348 | Protein_1514 | aminoglycoside phosphotransferase family protein | - |
| ACMXKM_RS07780 | - | 1644490..1645194 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| ACMXKM_RS07785 | - | 1645291..1645929 (+) | 639 | WP_096221929.1 | replication protein | - |
| ACMXKM_RS07790 | erm | 1646299..1647033 (-) | 735 | WP_072650419.1 | 23S ribosomal RNA methyltransferase Erm | - |
| ACMXKM_RS07795 | - | 1647250..1647954 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| ACMXKM_RS07800 | - | 1648169..1648474 (-) | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| ACMXKM_RS07805 | floR | 1648502..1649716 (-) | 1215 | WP_011453054.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| ACMXKM_RS07810 | - | 1649872..1650756 (-) | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| ACMXKM_RS07815 | - | 1650787..1651728 (-) | 942 | Protein_1522 | IS91-like element ISVsa3 family transposase | - |
| ACMXKM_RS07820 | - | 1651834..1652670 (-) | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| ACMXKM_RS07825 | aph(3'')-Ib | 1652670..1653473 (-) | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| ACMXKM_RS07830 | - | 1653543..1654184 (-) | 642 | WP_005826111.1 | type A-3 chloramphenicol O-acetyltransferase CatIII | - |
| ACMXKM_RS07835 | sul2 | 1654251..1655066 (-) | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| ACMXKM_RS07840 | - | 1655344..1656003 (-) | 660 | Protein_1527 | IS1595 family transposase | - |
| ACMXKM_RS07845 | - | 1656013..1656213 (-) | 201 | WP_230268948.1 | hypothetical protein | - |
| ACMXKM_RS07850 | - | 1656247..1656459 (-) | 213 | WP_230268949.1 | hypothetical protein | - |
| ACMXKM_RS07855 | - | 1656472..1656729 (-) | 258 | WP_230268950.1 | hypothetical protein | - |
| ACMXKM_RS07860 | mobH | 1657089..1659068 (+) | 1980 | WP_230268951.1 | MobH family relaxase | - |
| ACMXKM_RS07865 | - | 1659167..1659988 (+) | 822 | WP_405097415.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16731.47 Da Isoelectric Point: 4.9657
>NTDB_id=1095936 ACMXKM_RS07555 WP_006248858.1 1609850..1610293(+) (ssb) [Pasteurella multocida strain 200011]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWNDKNTGERRELTEWHRIVFYRRQAEVCGQYLRKGSKVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNSSNGYEGQQTVNQQQTPSAPPPIPPSDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWNDKNTGERRELTEWHRIVFYRRQAEVCGQYLRKGSKVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNSSNGYEGQQTVNQQQTPSAPPPIPPSDNFDDDIPF
Nucleotide
Download Length: 444 bp
>NTDB_id=1095936 ACMXKM_RS07555 WP_006248858.1 1609850..1610293(+) (ssb) [Pasteurella multocida strain 200011]
ATGGCTGGCATCAATAAAGTCATTATTGTAGGCAACCTAGGCAATGATCCTGAAATGCGGACTATGCCTAATGGCGAAGC
AGTTGCAAATATCAGTGTAGCAACGTCAGAGTCTTGGAATGATAAAAATACCGGAGAACGCCGAGAGCTTACGGAATGGC
ACCGTATTGTGTTCTACCGCCGTCAAGCAGAAGTCTGTGGTCAATATCTACGGAAAGGTTCAAAAGTATATATAGAAGGT
CGTTTACGTACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTACTACAGAT
GCTTGATAGTCGTAACTCGTCCAATGGATATGAAGGACAGCAAACAGTCAATCAACAGCAGACTCCATCTGCTCCGCCTC
CTATACCACCTTCCGATAACTTCGATGACGATATCCCGTTCTGA
ATGGCTGGCATCAATAAAGTCATTATTGTAGGCAACCTAGGCAATGATCCTGAAATGCGGACTATGCCTAATGGCGAAGC
AGTTGCAAATATCAGTGTAGCAACGTCAGAGTCTTGGAATGATAAAAATACCGGAGAACGCCGAGAGCTTACGGAATGGC
ACCGTATTGTGTTCTACCGCCGTCAAGCAGAAGTCTGTGGTCAATATCTACGGAAAGGTTCAAAAGTATATATAGAAGGT
CGTTTACGTACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTACTACAGAT
GCTTGATAGTCGTAACTCGTCCAATGGATATGAAGGACAGCAAACAGTCAATCAACAGCAGACTCCATCTGCTCCGCCTC
CTATACCACCTTCCGATAACTTCGATGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
65 |
100 |
0.796 |
| ssb | Vibrio cholerae strain A1552 |
52.023 |
100 |
0.612 |
| ssb | Neisseria meningitidis MC58 |
45.665 |
100 |
0.537 |
| ssb | Neisseria gonorrhoeae MS11 |
45.087 |
100 |
0.531 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
31.977 |
100 |
0.374 |