Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMYNJ_RS02235 Genome accession   NZ_CP180391
Coordinates   512804..514324 (-) Length   506 a.a.
NCBI ID   WP_218490388.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. polysciadis strain Pgu1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 507804..519324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYNJ_RS02215 - 508422..509543 (+) 1122 WP_122273153.1 fatty acid desaturase family protein -
  ACMYNJ_RS02220 - 509607..511169 (-) 1563 WP_416203782.1 EAL domain-containing protein -
  ACMYNJ_RS02225 - 511549..511725 (+) 177 WP_008574834.1 hypothetical protein -
  ACMYNJ_RS02230 - 511949..512458 (-) 510 WP_008574836.1 lipocalin family protein -
  ACMYNJ_RS02235 comM 512804..514324 (-) 1521 WP_218490388.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMYNJ_RS02240 ubiK 514340..514618 (-) 279 WP_008574840.1 ubiquinone biosynthesis accessory factor UbiK -
  ACMYNJ_RS02245 - 514772..515146 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  ACMYNJ_RS02250 - 515624..517609 (+) 1986 WP_011348871.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACMYNJ_RS02255 - 517814..518470 (-) 657 WP_008574844.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53904.66 Da        Isoelectric Point: 8.2739

>NTDB_id=1095629 ACMYNJ_RS02235 WP_218490388.1 512804..514324(-) (comM) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSACVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1095629 ACMYNJ_RS02235 WP_218490388.1 512804..514324(-) (comM) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGTATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCGGCCATCGCCGGACACGTCGAAGCCTTCACCGCGCGTACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCACCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCACGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGTAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCTGCGTGCGTGCCCGCGTGGTCGCCGCGCGACAGCGACAGCTTGCACGCGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCCCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment