Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLBLI_RS18920 Genome accession   NZ_CP180210
Coordinates   4335163..4336683 (+) Length   506 a.a.
NCBI ID   WP_414829077.1    Uniprot ID   -
Organism   Alteromonas sp. H39     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4330163..4341683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBLI_RS18900 (ACLBLI_18900) ilvD 4330396..4332246 (-) 1851 WP_414829074.1 dihydroxy-acid dehydratase -
  ACLBLI_RS18905 (ACLBLI_18905) - 4332268..4333200 (-) 933 WP_218310530.1 branched-chain amino acid transaminase -
  ACLBLI_RS18910 (ACLBLI_18910) - 4333645..4334262 (+) 618 WP_414829075.1 trimeric intracellular cation channel family protein -
  ACLBLI_RS18915 (ACLBLI_18915) - 4334683..4334919 (+) 237 WP_414829076.1 hypothetical protein -
  ACLBLI_RS18920 (ACLBLI_18920) comM 4335163..4336683 (+) 1521 WP_414829077.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLBLI_RS18925 (ACLBLI_18925) ilvY 4336665..4337528 (-) 864 WP_414829078.1 HTH-type transcriptional activator IlvY -
  ACLBLI_RS18930 (ACLBLI_18930) ilvC 4337682..4339160 (+) 1479 WP_414829079.1 ketol-acid reductoisomerase -
  ACLBLI_RS18935 (ACLBLI_18935) - 4339705..4340037 (+) 333 WP_218312056.1 hypothetical protein -
  ACLBLI_RS18940 (ACLBLI_18940) - 4340249..4341490 (-) 1242 WP_414829080.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54173.09 Da        Isoelectric Point: 6.7691

>NTDB_id=1094568 ACLBLI_RS18920 WP_414829077.1 4335163..4336683(+) (comM) [Alteromonas sp. H39]
MSVASVITFAGQGMAAPQITVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPAEIPKSGGR
YDLPIAIGVLVACGVLPATCLSRFAFVGELGLNGELKPVKGIIPVLLACDANQSELILPAANDAEAQLVEGVRRFPATTL
LDVFHHLTGDVPLATGQVWRSKAGADATMLQWDDIVGQEQAKRALMVAAAGGHNLLMLGPPGTGKSLLASRLLGLLPPLD
QDEAMAVAAIRSVKGEPLVQQGFYQRPFRSPHHTASTAALIGGGTQPTPGEVSLAHCGVLFLDELPEFGRRTLDVLREPL
ETGDVHISRASAQVCFPARFQLLAAMNPSPTGDTDDNRCTPQQQLRYLNRLSGPLLDRIDIQIEVPRLKSFVLNNPQPDA
QQDSQIAAREAVWQARARQQERQGKTNSALASGELAEHCKLSASDLSFVQHAAESLKLSMRTFHRTLKVARTLADLDNGD
AVTRAHLAEALGYRALDTLINQLSGV

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1094568 ACLBLI_RS18920 WP_414829077.1 4335163..4336683(+) (comM) [Alteromonas sp. H39]
ATGAGTGTAGCGTCGGTTATCACATTCGCCGGGCAGGGTATGGCTGCGCCACAGATAACGGTTGAAATCCATCTTGCCAA
CGGATTGCCCGCATTTCAGTTAGTCGGCATGGCTGAAACCAGCGTCAAAGAAGCCCGGGAACGAGTGCGTTCAGCACTAA
TCAACAGCGGCTTCGAGTTTCCGGCCAAACGTATCACAGTAAACCTCGCCCCTGCTGAAATCCCAAAATCAGGAGGCCGC
TATGACTTACCCATTGCCATTGGCGTGTTGGTGGCGTGTGGCGTATTACCGGCAACGTGTCTGTCCCGCTTCGCGTTCGT
CGGCGAGCTCGGCCTGAACGGTGAACTCAAACCAGTAAAAGGTATTATTCCTGTTTTACTGGCTTGCGACGCGAATCAAA
GTGAGCTCATTCTGCCCGCCGCTAACGATGCAGAAGCGCAGCTAGTGGAGGGGGTACGACGCTTTCCGGCAACCACACTG
CTGGATGTTTTCCACCACCTCACAGGGGATGTTCCGCTGGCGACCGGGCAGGTTTGGCGCAGTAAGGCTGGTGCAGACGC
AACCATGCTACAGTGGGACGATATTGTAGGTCAGGAACAGGCGAAGCGCGCATTGATGGTTGCCGCAGCTGGCGGCCATA
ATCTATTGATGCTTGGCCCGCCTGGCACCGGCAAGAGCTTGCTTGCCAGCCGCCTGCTGGGGCTACTGCCGCCACTGGAT
CAGGATGAAGCGATGGCCGTGGCGGCAATCCGGTCCGTAAAAGGTGAACCTTTGGTCCAGCAGGGCTTTTATCAACGCCC
CTTTCGCAGCCCACACCATACTGCATCGACGGCGGCCCTGATTGGCGGAGGCACGCAGCCTACACCAGGCGAAGTCTCGT
TAGCTCACTGCGGCGTATTGTTTCTTGACGAGCTTCCGGAGTTTGGCAGGCGGACACTTGATGTATTGCGTGAGCCACTG
GAAACCGGGGATGTGCATATCTCCCGCGCCAGTGCGCAGGTGTGTTTTCCTGCTCGCTTTCAGTTACTGGCAGCCATGAA
CCCAAGCCCGACCGGCGACACCGATGACAACCGGTGCACACCGCAACAACAACTTCGCTACCTTAACCGCCTGTCCGGTC
CTTTACTGGATCGCATTGATATTCAGATTGAAGTGCCCAGACTGAAATCGTTTGTGTTAAACAACCCGCAACCCGACGCG
CAGCAAGACTCGCAAATTGCAGCCCGAGAGGCGGTATGGCAGGCCAGAGCAAGGCAACAGGAAAGACAGGGTAAAACCAA
TTCCGCGCTGGCCAGCGGCGAGCTGGCAGAGCACTGCAAACTGTCTGCAAGCGATCTGAGTTTTGTGCAGCACGCTGCAG
AATCACTGAAACTGTCGATGCGAACCTTTCATCGCACACTAAAGGTCGCCCGAACGCTGGCAGATCTGGATAACGGTGAC
GCGGTAACCCGTGCCCACCTTGCTGAGGCGCTGGGTTACCGGGCGCTGGATACGTTAATTAATCAGTTAAGCGGAGTATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.425

100

0.54
  comM Vibrio cholerae strain A1552

51.976

100

0.52
  comM Glaesserella parasuis strain SC1401

50.884

100

0.512
  comM Vibrio campbellii strain DS40M4

50

100

0.5
  comM Legionella pneumophila str. Paris

46.185

98.419

0.455
  comM Legionella pneumophila strain ERS1305867

46.185

98.419

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.2

98.814

0.417

Multiple sequence alignment