Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMVO4_RS13465 | Genome accession | NZ_CP180205 |
| Coordinates | 2937170..2937706 (-) | Length | 178 a.a. |
| NCBI ID | WP_069667424.1 | Uniprot ID | A0AAE5LJP0 |
| Organism | Vibrio europaeus strain EX1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2932170..2942706
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVO4_RS13445 (ACMVO4_13445) | - | 2932570..2932842 (-) | 273 | WP_412034875.1 | MSHA biogenesis protein MshK | - |
| ACMVO4_RS13450 (ACMVO4_13450) | pilO | 2932886..2933536 (-) | 651 | WP_414931525.1 | type 4a pilus biogenesis protein PilO | - |
| ACMVO4_RS13455 (ACMVO4_13455) | - | 2933536..2934978 (-) | 1443 | WP_414931526.1 | MSHA biogenesis protein MshI | - |
| ACMVO4_RS13460 (ACMVO4_13460) | csrD | 2934987..2937005 (-) | 2019 | WP_272279609.1 | RNase E specificity factor CsrD | - |
| ACMVO4_RS13465 (ACMVO4_13465) | ssb | 2937170..2937706 (-) | 537 | WP_069667424.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMVO4_RS13470 (ACMVO4_13470) | qstR | 2937990..2938640 (+) | 651 | WP_069667423.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACMVO4_RS13475 (ACMVO4_13475) | galU | 2938759..2939634 (+) | 876 | WP_171383325.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACMVO4_RS13480 (ACMVO4_13480) | uvrA | 2939776..2942598 (+) | 2823 | WP_171383326.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19597.69 Da Isoelectric Point: 5.2157
>NTDB_id=1094520 ACMVO4_RS13465 WP_069667424.1 2937170..2937706(-) (ssb) [Vibrio europaeus strain EX1]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPGQGMGQQQQPQQGGWGQPQQPAMQHQPAQQPQSQPQQ
AQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPGQGMGQQQQPQQGGWGQPQQPAMQHQPAQQPQSQPQQ
AQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1094520 ACMVO4_RS13465 WP_069667424.1 2937170..2937706(-) (ssb) [Vibrio europaeus strain EX1]
ATGGCTAGCCGTGGAGTTAACAAAGTTATTTTAGTCGGTAATCTGGGTTCTGACCCAGAAGTACGTTACATGCCAAGTGG
CGGTGCTGTAGCCAATATTACTATCGCAACGTCTGAATCGTGGCGTGATAAAGCCACTGGTGAACAGCGTGAAAAAACGG
AATGGCACCGTGTTGCACTATTTGGCAAGTTAGCTGAAGTTGCTGGTGAGTATCTACGTAAGGGCTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACAGAAGTTGTAGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGAGCTCCAGGTCAGGGTATGGGCCAACAGCAGCAACCTC
AACAAGGTGGATGGGGCCAACCTCAGCAGCCTGCAATGCAGCATCAACCTGCTCAACAGCCGCAGTCACAACCACAGCAA
GCTCAGCCACAGTACAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATTTTAGTCGGTAATCTGGGTTCTGACCCAGAAGTACGTTACATGCCAAGTGG
CGGTGCTGTAGCCAATATTACTATCGCAACGTCTGAATCGTGGCGTGATAAAGCCACTGGTGAACAGCGTGAAAAAACGG
AATGGCACCGTGTTGCACTATTTGGCAAGTTAGCTGAAGTTGCTGGTGAGTATCTACGTAAGGGCTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACAGAAGTTGTAGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGAGCTCCAGGTCAGGGTATGGGCCAACAGCAGCAACCTC
AACAAGGTGGATGGGGCCAACCTCAGCAGCCTGCAATGCAGCATCAACCTGCTCAACAGCCGCAGTCACAACCACAGCAA
GCTCAGCCACAGTACAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
85 |
100 |
0.86 |
| ssb | Glaesserella parasuis strain SC1401 |
56.316 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
100 |
0.494 |