Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACISAP_RS22275 Genome accession   NZ_CP180152
Coordinates   4699653..4701173 (+) Length   506 a.a.
NCBI ID   WP_058587335.1    Uniprot ID   -
Organism   Citrobacter amalonaticus isolate 2024CK-01695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4694653..4706173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACISAP_RS22250 (ACISAP_22250) ilvE 4696208..4697137 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  ACISAP_RS22255 (ACISAP_22255) ilvM 4697156..4697419 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  ACISAP_RS22260 (ACISAP_22260) ilvG 4697416..4699062 (-) 1647 WP_054177008.1 acetolactate synthase 2 catalytic subunit -
  ACISAP_RS22265 (ACISAP_22265) ilvX 4699065..4699115 (-) 51 WP_227657194.1 peptide IlvX -
  ACISAP_RS22270 (ACISAP_22270) ilvL 4699202..4699300 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ACISAP_RS22275 (ACISAP_22275) comM 4699653..4701173 (+) 1521 WP_058587335.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACISAP_RS22280 (ACISAP_22280) maoP 4701199..4701537 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  ACISAP_RS22285 (ACISAP_22285) hdfR 4701656..4702489 (+) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55048.88 Da        Isoelectric Point: 7.5074

>NTDB_id=1094181 ACISAP_RS22275 WP_058587335.1 4699653..4701173(+) (comM) [Citrobacter amalonaticus isolate 2024CK-01695]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLNQYELVGELALTGALRGVPGAISSATEAIRVGRGIIVAKENENEVGLIEGEGCLVADHL
QAVCAFLEGKHDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLANRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKQRVIGARERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1094181 ACISAP_RS22275 WP_058587335.1 4699653..4701173(+) (comM) [Citrobacter amalonaticus isolate 2024CK-01695]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACATTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTAGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCAACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAAACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
TGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAACCGTCTTAATGGCCTGTTACCGGCATTAAGTAACGAA
GAAGCACTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACCAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGCACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGTACGCGCGCTAAGATCACCTATCCAGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACACCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCACCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACAGCGGGTCATTGGTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCGCA
CCTGCAAAACAGGGAGATACGCGAACATTGTCCGTTAGCGGATGAAGACGCGCAGTGGCTTGAAGAGACACTCATCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGATTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGATTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60

99.802

0.599
  comM Haemophilus influenzae Rd KW20

59.289

100

0.593
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.218

99.802

0.581
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429

Multiple sequence alignment