Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACISAP_RS20590 Genome accession   NZ_CP180152
Coordinates   4327812..4328339 (-) Length   175 a.a.
NCBI ID   WP_042999045.1    Uniprot ID   -
Organism   Citrobacter amalonaticus isolate 2024CK-01695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4322248..4327605 4327812..4328339 flank 207


Gene organization within MGE regions


Location: 4322248..4328339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACISAP_RS20570 (ACISAP_20570) - 4322248..4323228 (-) 981 WP_000019445.1 IS5-like element ISKpn26 family transposase -
  ACISAP_RS20575 (ACISAP_20575) - 4323849..4326557 (+) 2709 WP_044328567.1 cation-transporting P-type ATPase -
  ACISAP_RS20580 (ACISAP_20580) - 4326623..4327054 (-) 432 WP_042999046.1 universal stress protein -
  ACISAP_RS20585 (ACISAP_20585) tnpA 4327342..4327605 (-) 264 Protein_4027 IS200/IS605 family transposase -
  ACISAP_RS20590 (ACISAP_20590) ssb 4327812..4328339 (-) 528 WP_042999045.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18877.92 Da        Isoelectric Point: 5.2456

>NTDB_id=1094178 ACISAP_RS20590 WP_042999045.1 4327812..4328339(-) (ssb) [Citrobacter amalonaticus isolate 2024CK-01695]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1094178 ACISAP_RS20590 WP_042999045.1 4327812..4328339(-) (ssb) [Citrobacter amalonaticus isolate 2024CK-01695]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGTGAAATGAAAGAGCAGACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTAGAGAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCACCGGCAGGCGGTCAGCAGCAACAGGGTGGTTGGGGTC
AACCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCACCGGCAGCA
CCGTCTAATGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

46.995

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.377

Multiple sequence alignment