Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMHYC_RS17895 Genome accession   NZ_CP180027
Coordinates   3771284..3772771 (+) Length   495 a.a.
NCBI ID   WP_199950304.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3766284..3777771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS17870 (ACMHYC_17870) ribD 3767192..3768292 (-) 1101 WP_199950281.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACMHYC_RS17875 (ACMHYC_17875) nrdR 3768305..3768769 (-) 465 WP_005226327.1 transcriptional regulator NrdR -
  ACMHYC_RS17880 (ACMHYC_17880) - 3768894..3770303 (-) 1410 WP_414659480.1 ammonium transporter -
  ACMHYC_RS17885 (ACMHYC_17885) glnK 3770373..3770711 (-) 339 WP_004656379.1 P-II family nitrogen regulator -
  ACMHYC_RS17890 (ACMHYC_17890) - 3770987..3771214 (+) 228 WP_005226325.1 accessory factor UbiK family protein -
  ACMHYC_RS17895 (ACMHYC_17895) comM 3771284..3772771 (+) 1488 WP_199950304.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMHYC_RS17900 (ACMHYC_17900) - 3772947..3773711 (+) 765 WP_199950279.1 sulfite exporter TauE/SafE family protein -
  ACMHYC_RS17905 (ACMHYC_17905) - 3773814..3774584 (-) 771 WP_150957069.1 TorF family putative porin -
  ACMHYC_RS17910 (ACMHYC_17910) - 3775323..3776618 (+) 1296 WP_199950278.1 OprD family outer membrane porin -
  ACMHYC_RS17915 (ACMHYC_17915) ppa 3776718..3777245 (-) 528 WP_004656389.1 inorganic diphosphatase -
  ACMHYC_RS17920 (ACMHYC_17920) - 3777360..3777758 (-) 399 WP_199950277.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53977.68 Da        Isoelectric Point: 7.7741

>NTDB_id=1094111 ACMHYC_RS17895 WP_199950304.1 3771284..3772771(+) (comM) [Acinetobacter courvalinii isolate 2024CK-01798]
MSFAKIYTRGLLGLHAPQIEVEVHISAGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEHSTEGFEFIGELALDGHLRPISGALTIAMACQQARHRLLLPSGNLEEANQLPDFEAYAAQHL
QEVCAHFSGNTKLVAAPQRPNSATSAYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAPHSFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDRTPTE
NSASVRQRVITAYQKQIQRQQCLNQALSPKLLEQHALLDDSSTKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDLIS
SSHLTEALSYRGNQT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1094111 ACMHYC_RS17895 WP_199950304.1 3771284..3772771(+) (comM) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTCTTTTGCCAAGATCTACACCAGAGGGCTATTAGGACTACATGCCCCGCAAATTGAAGTTGAAGTACATATCAGTGC
AGGGCTTCCTTCCTTAACCATTGTGGGTTTGCCAGAAGCTGCCGTGCGTGAAAGTAAAGATCGTGTACGTTCTGCCATCA
TCAATAGCGGTTTTCAATTTCCCACCAAGCGCTTAACCATCAATTTAGCACCTGCCGATTTACCTAAAGATGGTTCCCGG
CTGGATCTGCCGATTGCTTTGGGGATTCTGATTGCTTCTGGACAATTACCGGAACACAGTACCGAAGGCTTTGAATTTAT
AGGGGAACTGGCGCTGGATGGACATTTACGTCCCATTTCAGGGGCATTAACCATCGCCATGGCCTGCCAGCAGGCCCGAC
ATCGTTTGCTACTGCCCTCTGGTAATCTGGAGGAGGCAAACCAACTTCCCGATTTTGAAGCCTATGCCGCGCAACATTTA
CAAGAGGTGTGTGCACATTTTTCGGGCAATACCAAGCTGGTAGCTGCACCACAACGACCAAACTCAGCCACATCTGCCTA
TGCATTTGATCTGGCCGATGTAAAAGGACAGTTGCGCCCACGCCGTGCGCTGGAAATTGCCGCTGCGGGCGGACATTCTT
TATTATTTAAAGGCCCACCCGGCACAGGTAAAACCTTATTGGCATCTCGCCTGCCTTCGATTTTACCGCCGCTCAATGCA
CAGGAAAATCTTGAAGTCGCCAGTATTTATTCGGTAGCCAACGCCCCGCACAGTTTTGGCCAGCGTCCATTTAGAGCACC
CCACCATACCGCCTCAGCCATTGCGCTGGTCGGTGGCGGTTCCCAACCCAAGCCAGGTGAAATCACCTTAGCGCATCTGG
GTGTTTTATTTTTAGATGAATTACCTGAATTTGACCGCAAGGTGCTGGAAGTATTACGACAACCATTAGAGTCCAAGGAG
ATTGTGATCTCTCGTGCGGCACGGCAAATGACCTTTCCTGCGAATTTCCAGTTTATTGCAGCCATGAATCCTTGCCCATG
TGGTTATGCCTTCAATCAGGACAGCCGTTGCCAATGTTCCCCGGAAAGTATTCAACGCTATCAAAACCGAATCTCTGGCC
CATTGCTGGATCGTATTGATTTACATATTGATGTACCGCCGTTACAAGCTCAGGAACTACAAGACCGTACCCCCACCGAG
AATTCTGCCAGTGTGCGGCAGCGTGTGATTACTGCCTACCAAAAACAGATCCAGAGACAGCAATGCTTAAATCAGGCTTT
GTCACCGAAGTTACTGGAACAACATGCCTTGTTAGATGACAGCTCAACCAAAATTATTGAGATGGCACAGCAGCGTCTCA
ACCTGTCTGCACGTGCCTATCATCGGGTATTGCGCGTTGCACGCACCATTGCGGACTTAGCCGAAAGTGATCTGATCTCA
AGCAGTCATTTAACCGAAGCACTGTCCTATCGGGGCAATCAGACCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.308

100

0.515
  comM Vibrio campbellii strain DS40M4

50.302

100

0.505
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment