Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACINK0_RS11535 Genome accession   NZ_CP179945
Coordinates   2254768..2255871 (-) Length   367 a.a.
NCBI ID   WP_414656795.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2249768..2260871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS11485 (ACINK0_11485) - 2249835..2250416 (+) 582 WP_414656785.1 GIY-YIG nuclease family protein -
  ACINK0_RS11490 (ACINK0_11490) - 2250413..2250682 (+) 270 WP_414656786.1 hypothetical protein -
  ACINK0_RS11495 (ACINK0_11495) - 2250838..2251578 (+) 741 WP_414656787.1 hypothetical protein -
  ACINK0_RS11500 (ACINK0_11500) - 2251752..2252645 (-) 894 WP_414656788.1 DUF3560 domain-containing protein -
  ACINK0_RS11505 (ACINK0_11505) - 2252642..2252848 (-) 207 WP_414656789.1 hypothetical protein -
  ACINK0_RS11510 (ACINK0_11510) - 2252845..2253303 (-) 459 WP_414656790.1 hypothetical protein -
  ACINK0_RS11515 (ACINK0_11515) - 2253300..2253614 (-) 315 WP_414656791.1 hypothetical protein -
  ACINK0_RS11520 (ACINK0_11520) - 2253750..2253959 (+) 210 WP_414656792.1 helix-turn-helix domain-containing protein -
  ACINK0_RS11525 (ACINK0_11525) - 2253984..2254502 (-) 519 WP_414656793.1 hypothetical protein -
  ACINK0_RS11530 (ACINK0_11530) - 2254565..2254765 (-) 201 WP_414656794.1 hypothetical protein -
  ACINK0_RS11535 (ACINK0_11535) comM 2254768..2255871 (-) 1104 WP_414656795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACINK0_RS11540 (ACINK0_11540) - 2255944..2256918 (-) 975 WP_414656796.1 ABC transporter substrate-binding protein -
  ACINK0_RS11545 (ACINK0_11545) - 2257026..2257574 (-) 549 WP_414656797.1 hypothetical protein -
  ACINK0_RS11550 (ACINK0_11550) - 2257691..2259814 (-) 2124 WP_414656798.1 TRAP transporter permease -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38464.23 Da        Isoelectric Point: 6.5037

>NTDB_id=1094066 ACINK0_RS11535 WP_414656795.1 2254768..2255871(-) (comM) [Deinococcus sp. VB343]
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAIRNSGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQEMLPREALEETIVAGELALDGSLRPIAGAINLSLLAAAHDLEALLPEANAQEAALIEGASVYGAATLQ
EAVLHLSGQKRLPQTEAAPPADDPTLFPDLGDLKGQTAARRALEVALAGGHNLLMVGSPGSGKTMLARRAPGLLPPLTRT
EALEVTRIHSAAGLLTSRGSFSRHAPFRAPHHTVSDAGLIGGGSIPKPGEVSLAHRGLLFLDEFPEFSRKALETLRQPLE
DGRVVISRARATVEYPARFQLISAMNPCPCKLQSHLHPSPTPSAQAA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1094066 ACINK0_RS11535 WP_414656795.1 2254768..2255871(-) (comM) [Deinococcus sp. VB343]
GTGCTAGCCCGCGCCCGCAGCGTGGCCCTGATTGGTGTAGACGCGGTGCCAGTCGAGGTCGAGGTGGACGTGTCGCCGGG
TTTGCCCGCCTTTACCGTCGTCGGCCTTCCCGACCAGGCGGTGAGCGAGGCGCGGGAACGGGTACGGGCCGCCATTCGCA
ATTCGGGCCTGCCCTTTCCGGCGGCGCGAATCACGGTCAATCTCGCCCCCGCCGACCTACGAAAAGAAGGGCCGCTGTAC
GACCTGCCCATTGCGCTGGGGCTGCTCGCCGCGCAGGAGATGCTGCCGCGCGAGGCACTGGAAGAAACGATTGTGGCGGG
TGAACTGGCGCTGGACGGCAGCTTGCGGCCTATTGCGGGGGCTATAAATCTGTCGCTGCTGGCGGCGGCGCACGACCTCG
AAGCCCTGCTGCCCGAGGCCAATGCCCAGGAAGCCGCGCTGATAGAGGGCGCGAGCGTGTACGGCGCGGCGACCCTGCAA
GAAGCGGTGCTGCACCTCAGCGGGCAAAAGCGCCTGCCCCAGACCGAGGCAGCCCCACCAGCCGACGACCCCACACTGTT
TCCCGACCTGGGCGACCTGAAGGGGCAAACGGCGGCGCGGCGGGCGCTGGAAGTGGCGCTGGCGGGCGGTCACAACCTGT
TGATGGTCGGTAGTCCCGGCAGTGGCAAAACCATGCTGGCGCGGCGTGCACCGGGGCTACTGCCGCCCCTGACCCGCACC
GAGGCACTGGAAGTCACCCGCATCCATTCGGCGGCGGGCCTGCTGACCAGCCGGGGAAGTTTCAGCCGCCATGCACCGTT
TCGTGCGCCGCACCACACTGTTTCGGACGCGGGACTCATCGGTGGGGGCAGCATTCCCAAGCCGGGGGAAGTGTCGTTGG
CGCACCGGGGCCTCCTGTTTCTCGACGAATTCCCCGAATTTTCGCGCAAGGCGCTGGAAACGCTGCGGCAACCGCTGGAA
GACGGCCGGGTGGTCATTTCCCGCGCCCGTGCCACGGTGGAGTATCCGGCCCGTTTCCAACTCATTTCTGCGATGAATCC
GTGCCCTTGCAAACTACAATCACACCTCCATCCCTCCCCTACCCCGTCAGCCCAGGCCGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-353)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

48.378

100

0.488
  comM Legionella pneumophila str. Paris

49.858

96.185

0.48
  comM Legionella pneumophila strain ERS1305867

49.858

96.185

0.48
  comM Vibrio cholerae strain A1552

50.287

94.823

0.477
  comM Glaesserella parasuis strain SC1401

47.541

99.728

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.169

96.73

0.466
  comM Vibrio campbellii strain DS40M4

48.563

94.823

0.46

Multiple sequence alignment