Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMG4N_RS16265 Genome accession   NZ_CP179932
Coordinates   3537374..3537895 (-) Length   173 a.a.
NCBI ID   WP_297766823.1    Uniprot ID   -
Organism   Alcanivorax sp. IL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3532374..3542895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4N_RS16245 (ACMG4N_16245) - 3532434..3533444 (+) 1011 WP_297766815.1 hypothetical protein -
  ACMG4N_RS16250 (ACMG4N_16250) gspD 3533561..3535621 (-) 2061 WP_414432439.1 type II secretion system secretin GspD -
  ACMG4N_RS16255 (ACMG4N_16255) gspC 3535633..3536496 (-) 864 WP_297766819.1 type II secretion system protein GspC -
  ACMG4N_RS16260 (ACMG4N_16260) gspN 3536637..3537365 (-) 729 WP_297766821.1 type II secretion system protein N -
  ACMG4N_RS16265 (ACMG4N_16265) ssb 3537374..3537895 (-) 522 WP_297766823.1 single-stranded DNA-binding protein Machinery gene
  ACMG4N_RS16270 (ACMG4N_16270) - 3538001..3539368 (-) 1368 WP_297766825.1 MFS transporter -
  ACMG4N_RS16275 (ACMG4N_16275) - 3539608..3540258 (+) 651 WP_297766828.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18737.42 Da        Isoelectric Point: 4.7884

>NTDB_id=1093969 ACMG4N_RS16265 WP_297766823.1 3537374..3537895(-) (ssb) [Alcanivorax sp. IL2]
MARGVNKVILIGNLGADPETRFMPSGGAVTNVRLATSETWKDKQSGQMQERTEWHRVVFFNKLGEIAGEYLKKGSKVYIE
GSIRTRKWQGQDGQDRYTTEIVANEMQMLDGRGDGGGQGGGYAPQGNQGGYQNQNENYGGGNAAPQQSQNPGQGQNQGGF
SGPADDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1093969 ACMG4N_RS16265 WP_297766823.1 3537374..3537895(-) (ssb) [Alcanivorax sp. IL2]
ATGGCGCGCGGCGTTAACAAGGTAATTCTGATTGGTAACCTGGGGGCAGACCCGGAAACCCGTTTCATGCCCAGCGGTGG
CGCGGTCACCAATGTTCGTCTGGCTACCAGTGAAACCTGGAAGGACAAGCAGAGCGGGCAGATGCAGGAACGCACTGAAT
GGCACCGGGTGGTATTTTTCAACAAGCTGGGCGAGATTGCCGGTGAGTACCTGAAGAAGGGCTCCAAGGTCTATATCGAA
GGCTCCATTCGTACCCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGCTACACCACCGAAATCGTGGCCAACGAAATGCA
GATGCTGGATGGCCGTGGTGATGGGGGTGGTCAAGGTGGTGGCTATGCGCCTCAGGGTAACCAGGGTGGCTACCAGAACC
AGAACGAAAATTACGGTGGCGGCAATGCCGCGCCACAGCAAAGCCAGAATCCCGGTCAGGGTCAAAATCAGGGCGGCTTC
AGCGGCCCGGCTGATGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.645

100

0.578
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Neisseria meningitidis MC58

47.727

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.486

Multiple sequence alignment