Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMG4N_RS04010 Genome accession   NZ_CP179932
Coordinates   858680..860170 (-) Length   496 a.a.
NCBI ID   WP_414432940.1    Uniprot ID   -
Organism   Alcanivorax sp. IL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 853680..865170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4N_RS03985 (ACMG4N_03985) - 853762..854790 (+) 1029 WP_297764754.1 AraC family transcriptional regulator -
  ACMG4N_RS03990 (ACMG4N_03990) - 854775..855428 (-) 654 WP_297764757.1 hypothetical protein -
  ACMG4N_RS03995 (ACMG4N_03995) - 855498..855989 (+) 492 WP_414432937.1 NUDIX hydrolase -
  ACMG4N_RS04000 (ACMG4N_04000) - 856063..856818 (+) 756 WP_414432938.1 SDR family NAD(P)-dependent oxidoreductase -
  ACMG4N_RS04005 (ACMG4N_04005) - 856838..858034 (+) 1197 WP_414432939.1 acyl-CoA dehydrogenase family protein -
  ACMG4N_RS04010 (ACMG4N_04010) comM 858680..860170 (-) 1491 WP_414432940.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMG4N_RS04015 (ACMG4N_04015) - 860375..860623 (-) 249 WP_297764770.1 accessory factor UbiK family protein -
  ACMG4N_RS04020 (ACMG4N_04020) glnK 860995..861333 (+) 339 WP_008930504.1 P-II family nitrogen regulator -
  ACMG4N_RS04025 (ACMG4N_04025) - 861406..862665 (+) 1260 WP_297764773.1 ammonium transporter -
  ACMG4N_RS04030 (ACMG4N_04030) - 862849..864048 (+) 1200 WP_272980087.1 class I SAM-dependent rRNA methyltransferase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53627.21 Da        Isoelectric Point: 8.2179

>NTDB_id=1093951 ACMG4N_RS04010 WP_414432940.1 858680..860170(-) (comM) [Alcanivorax sp. IL2]
MTHALLYSRAPLGIQAREVRVETHLAPGLPAFTIVGMGDTAVRESRDRVRSALVNSGFEFPQRRITVSLAPADLPKDGGR
FDLPIALGILLASGQLGKLDSNQYEFIGELALNGALSPVPGMLPCALACQPTGRTLIVPRDNADEAALAGATTVAGDQLA
QVAAHLVGQSPLPFHDHPAPQTITHEGGCLSEIRGQAAAKRVLEIAAAGGHSLLLSGPPGAGKSMLASRLPGLVPPLHPK
QALEVAAIHSLKQPRPAHQFHQRPYRAPHHTASATALVGGGSHPRPGEISLAHNGILFLDELPEFDRRVLEVLREPLETG
EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKGCGYRCDKAKRYQSKLSGPLLDRIDLHLDVPAVEAQELLGDRQG
ETSDTVRARVREAWQQQWQRQRRLNRELGSDDLEPLLRPHRDWLASVMTRMGLSARALHRSARVARTIADLAGADTVDRD
HLREALSYRQTVADTR

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1093951 ACMG4N_RS04010 WP_414432940.1 858680..860170(-) (comM) [Alcanivorax sp. IL2]
GTGACGCACGCATTGCTCTACAGCCGGGCACCGCTGGGCATTCAGGCCCGGGAAGTGCGGGTGGAAACCCACCTGGCACC
GGGCTTGCCCGCCTTCACCATCGTCGGCATGGGTGACACCGCGGTGCGGGAAAGCCGGGACCGGGTGCGCTCGGCACTGG
TCAACAGCGGCTTCGAGTTCCCCCAGCGACGCATCACCGTCAGCCTGGCACCGGCGGATCTGCCCAAAGATGGCGGTCGG
TTTGACCTGCCCATTGCCCTGGGCATCCTGCTCGCCAGTGGCCAGCTCGGAAAGCTGGACAGCAACCAATACGAATTTAT
CGGTGAGTTGGCATTAAATGGCGCCCTGAGCCCGGTGCCCGGCATGCTGCCCTGCGCCCTGGCCTGCCAGCCTACCGGCC
GCACCCTGATCGTTCCCCGCGACAACGCGGATGAAGCCGCGCTGGCCGGAGCCACCACCGTGGCCGGTGACCAGCTCGCC
CAGGTGGCAGCCCATTTGGTGGGCCAGTCTCCGCTACCGTTCCATGATCACCCGGCACCGCAAACCATCACCCATGAGGG
CGGCTGCCTCTCCGAAATCCGCGGCCAGGCCGCCGCCAAACGGGTGCTGGAGATTGCCGCGGCCGGCGGCCATTCCCTGC
TACTCAGCGGCCCGCCTGGCGCTGGCAAAAGCATGCTGGCTTCACGCCTGCCCGGGCTGGTTCCGCCGCTGCATCCGAAA
CAGGCGCTGGAAGTGGCAGCCATTCATTCCCTGAAACAGCCGCGCCCGGCCCACCAGTTCCACCAACGCCCCTATCGGGC
GCCCCACCATACCGCCTCAGCCACCGCCCTGGTTGGCGGCGGTAGCCACCCGCGCCCGGGAGAGATTTCCCTGGCGCATA
ACGGCATCCTGTTTCTCGATGAATTACCGGAGTTCGACCGGCGAGTACTGGAGGTATTACGCGAACCGCTGGAGACCGGC
GAGGTGAGCATCGCCCGGGCCGCCCAGCAGCTGACCTTCCCGGCCCGCTTTCAGTTGATCGCGGCCATGAACCCTTGCCC
CTGCGGTTACCTGGGCGACCCGGAGAAGGGCTGCGGCTATCGGTGCGACAAGGCCAAGCGCTACCAGAGCAAACTGTCCG
GCCCGTTGCTGGACCGCATCGATCTGCATCTGGACGTGCCCGCAGTAGAGGCGCAGGAACTGCTCGGTGATCGTCAGGGA
GAAACCAGCGACACCGTCCGCGCTCGGGTCCGCGAGGCCTGGCAACAGCAATGGCAGCGCCAGCGACGCCTGAATCGGGA
ACTGGGCAGCGACGACTTGGAGCCACTGTTACGCCCCCACCGGGACTGGCTGGCCAGCGTCATGACCCGCATGGGACTGT
CCGCCCGTGCCCTGCATCGCAGTGCCCGGGTGGCACGCACCATTGCCGATCTGGCCGGTGCTGACACCGTCGACCGCGAC
CACCTGCGCGAAGCCCTGAGCTATCGGCAAACGGTAGCTGACACCCGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.505

100

0.528
  comM Vibrio campbellii strain DS40M4

51.292

100

0.52
  comM Haemophilus influenzae Rd KW20

49.109

100

0.5
  comM Legionella pneumophila strain ERS1305867

48.708

100

0.494
  comM Legionella pneumophila str. Paris

48.708

100

0.494
  comM Glaesserella parasuis strain SC1401

48.008

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.262

100

0.429

Multiple sequence alignment