Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMG4M_RS16245 Genome accession   NZ_CP179931
Coordinates   3485819..3487309 (+) Length   496 a.a.
NCBI ID   WP_414430427.1    Uniprot ID   -
Organism   Alcanivorax sp. IL3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480819..3492309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4M_RS16225 (ACMG4M_16225) - 3481862..3483061 (-) 1200 WP_414430426.1 class I SAM-dependent rRNA methyltransferase -
  ACMG4M_RS16230 (ACMG4M_16230) - 3483344..3484603 (-) 1260 WP_035250608.1 ammonium transporter -
  ACMG4M_RS16235 (ACMG4M_16235) glnK 3484675..3485013 (-) 339 WP_008930504.1 P-II family nitrogen regulator -
  ACMG4M_RS16240 (ACMG4M_16240) - 3485385..3485633 (+) 249 WP_035250611.1 accessory factor UbiK family protein -
  ACMG4M_RS16245 (ACMG4M_16245) comM 3485819..3487309 (+) 1491 WP_414430427.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMG4M_RS16250 (ACMG4M_16250) - 3487954..3489150 (-) 1197 WP_035250620.1 acyl-CoA dehydrogenase family protein -
  ACMG4M_RS16255 (ACMG4M_16255) - 3489170..3489925 (-) 756 WP_035250623.1 SDR family NAD(P)-dependent oxidoreductase -
  ACMG4M_RS16260 (ACMG4M_16260) - 3489999..3490487 (-) 489 WP_035250625.1 NUDIX hydrolase -
  ACMG4M_RS16265 (ACMG4M_16265) - 3490792..3491820 (-) 1029 WP_035250627.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53698.38 Da        Isoelectric Point: 8.7979

>NTDB_id=1093944 ACMG4M_RS16245 WP_414430427.1 3485819..3487309(+) (comM) [Alcanivorax sp. IL3]
MTHALLYSRAPLGIQAREVRVETHLAPGLPAFTIVGMGDTAVRESRDRVRSALVNSGFEFPQRRITVSLAPADLPKDGGR
FDLPIALGILLASGQLGKLDSNQYEFIGELALNGALSPVPGMLPCALACQPTGRTLIVPRDNADEAALAGASTVAGDQLA
QVAAHLVGQSPLPLHDHPAPDTTTYEGGCLSEIRGQAAAKRVLEIAAAGGHSLLLSGPPGAGKSMLASRLPGLVPPLHPK
QALEVAAIHSLKQPRPARLFHQRPYRAPHHTASATALVGGGSHPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG
EVSIARAAQELTFPARFQLIAAMNPCPCGYLGDPEKGCGYRCDKAKRYQNKLSGPLLDRIDLHLDVPAVEARELLGDRQG
ETSATVRARVRDAWQRQWQRQRRLNRELGSDHLDPLLRPHRDWLANVMTRMGLSARALHRSARVARTIADLAGTDTVDRD
HLREALSYRQTVADTR

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1093944 ACMG4M_RS16245 WP_414430427.1 3485819..3487309(+) (comM) [Alcanivorax sp. IL3]
GTGACGCATGCATTGCTCTACAGCCGGGCACCACTGGGCATCCAGGCCCGGGAAGTGCGGGTGGAAACCCATCTGGCACC
GGGCCTGCCTGCCTTCACCATTGTCGGCATGGGCGACACCGCCGTGCGAGAAAGCCGGGACCGGGTGCGCTCGGCGCTGG
TCAACAGCGGCTTCGAGTTTCCCCAGCGGCGCATCACCGTGAGCCTGGCCCCGGCGGATCTACCCAAGGATGGCGGCCGT
TTTGATCTGCCCATTGCCCTGGGCATCCTGCTGGCCAGCGGGCAGCTCGGAAAACTGGACAGCAACCAGTACGAATTTAT
CGGCGAGCTGGCATTGAATGGCGCCCTGAGCCCGGTTCCCGGCATGTTGCCCTGCGCCCTGGCCTGCCAGCCCACCGGCC
GCACCTTGATCGTTCCCCGTGACAACGCAGATGAAGCCGCACTGGCAGGTGCCAGCACCGTGGCCGGCGACCAACTCGCC
CAGGTGGCAGCCCACCTGGTGGGCCAGTCCCCGCTGCCACTGCACGATCACCCGGCCCCGGACACCACCACCTATGAAGG
AGGCTGCCTCTCGGAAATCCGCGGCCAGGCAGCCGCCAAGCGGGTACTGGAGATTGCCGCCGCCGGGGGGCATTCGCTGC
TGCTCAGTGGCCCGCCCGGTGCCGGTAAAAGCATGCTGGCCTCGCGCCTGCCGGGGCTGGTGCCTCCACTGCATCCGAAG
CAGGCTCTGGAAGTGGCGGCCATTCATTCCCTGAAGCAGCCGCGTCCGGCGCGCCTGTTCCACCAGCGCCCCTACCGGGC
GCCCCACCATACCGCCTCGGCCACCGCTCTGGTTGGCGGCGGCAGCCATCCTCGGCCCGGGGAAATTTCCCTGGCCCACC
ACGGCATCCTGTTTCTCGATGAGTTACCGGAGTTCGACCGGCGAGTACTGGAGGTATTACGTGAACCGCTGGAAACCGGT
GAGGTGAGCATCGCCCGGGCTGCCCAAGAGCTCACCTTCCCGGCCCGCTTTCAATTGATCGCCGCCATGAACCCCTGCCC
CTGCGGTTACCTGGGCGACCCGGAGAAGGGCTGCGGCTATCGTTGCGACAAGGCCAAGCGCTACCAGAACAAACTGTCCG
GCCCCTTGTTGGACCGTATTGATCTGCACCTGGACGTACCCGCGGTGGAAGCCCGGGAACTACTGGGCGACCGGCAGGGA
GAAACCAGCGCGACAGTCCGCGCCCGGGTACGCGACGCCTGGCAACGGCAATGGCAGCGCCAGCGACGCCTGAACAGGGA
ACTGGGCAGCGATCACCTGGATCCGCTGCTACGCCCTCATCGGGACTGGCTGGCCAACGTCATGACCCGCATGGGGTTGT
CCGCCCGGGCCCTGCATCGCAGTGCCCGGGTGGCACGCACCATTGCCGATTTGGCCGGAACAGATACCGTCGACCGGGAT
CACCTACGCGAAGCCCTGAGTTATCGACAAACGGTAGCGGACACCCGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.292

100

0.52
  comM Vibrio cholerae strain A1552

51.606

100

0.518
  comM Haemophilus influenzae Rd KW20

49.407

100

0.504
  comM Legionella pneumophila str. Paris

49

100

0.494
  comM Legionella pneumophila strain ERS1305867

49

100

0.494
  comM Glaesserella parasuis strain SC1401

47.106

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.435

Multiple sequence alignment