Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMG4M_RS03970 | Genome accession | NZ_CP179931 |
| Coordinates | 838416..838946 (+) | Length | 176 a.a. |
| NCBI ID | WP_035249972.1 | Uniprot ID | A0A7G2S588 |
| Organism | Alcanivorax sp. IL3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 833416..843946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMG4M_RS03960 (ACMG4M_03960) | - | 836053..836703 (-) | 651 | WP_035249967.1 | response regulator transcription factor | - |
| ACMG4M_RS03965 (ACMG4M_03965) | - | 836943..838310 (+) | 1368 | WP_035249970.1 | MFS transporter | - |
| ACMG4M_RS03970 (ACMG4M_03970) | ssb | 838416..838946 (+) | 531 | WP_035249972.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMG4M_RS03975 (ACMG4M_03975) | gspN | 838955..839683 (+) | 729 | WP_272974726.1 | type II secretion system protein N | - |
| ACMG4M_RS03980 (ACMG4M_03980) | gspC | 839823..840683 (+) | 861 | WP_035249975.1 | type II secretion system protein GspC | - |
| ACMG4M_RS03985 (ACMG4M_03985) | gspD | 840695..842755 (+) | 2061 | WP_232222137.1 | type II secretion system secretin GspD | - |
| ACMG4M_RS03990 (ACMG4M_03990) | - | 842867..843877 (-) | 1011 | WP_272962182.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19093.76 Da Isoelectric Point: 4.7884
>NTDB_id=1093926 ACMG4M_RS03970 WP_035249972.1 838416..838946(+) (ssb) [Alcanivorax sp. IL3]
MARGVNKVILIGNLGADPETRFMPSGGAVTNVRLATSETWKDKQSGQMQERTEWHRVVFFNKLGEIAGEYLKKGSKVYIE
GSIRTRKWQGQDGQDRYTTEIVANEMQMLDGRGDGGGGQGGGYAPQGNQGGYQNQNENYGGGSAAPQQNQNQNPGQNQNQ
GGFSGPADDFDDDIPF
MARGVNKVILIGNLGADPETRFMPSGGAVTNVRLATSETWKDKQSGQMQERTEWHRVVFFNKLGEIAGEYLKKGSKVYIE
GSIRTRKWQGQDGQDRYTTEIVANEMQMLDGRGDGGGGQGGGYAPQGNQGGYQNQNENYGGGSAAPQQNQNQNPGQNQNQ
GGFSGPADDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1093926 ACMG4M_RS03970 WP_035249972.1 838416..838946(+) (ssb) [Alcanivorax sp. IL3]
ATGGCGCGCGGCGTTAACAAGGTAATTCTGATTGGTAACCTGGGGGCAGACCCGGAAACCCGTTTCATGCCCAGCGGTGG
CGCGGTCACCAATGTTCGTCTGGCTACCAGTGAAACCTGGAAGGACAAGCAGAGCGGGCAGATGCAGGAACGCACTGAAT
GGCACCGGGTGGTATTTTTCAACAAGCTGGGTGAAATTGCCGGTGAGTACCTGAAGAAGGGCTCCAAGGTCTATATCGAA
GGCTCCATTCGTACCCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGCTACACTACCGAAATCGTGGCCAACGAAATGCA
GATGCTGGATGGCCGTGGTGACGGCGGCGGTGGCCAGGGTGGCGGCTATGCGCCTCAGGGTAACCAGGGTGGTTACCAGA
ACCAGAACGAGAATTACGGTGGCGGCAGTGCCGCGCCGCAGCAGAATCAGAACCAGAACCCCGGTCAGAATCAAAATCAG
GGCGGCTTCAGTGGCCCGGCAGATGATTTTGACGACGATATCCCGTTCTGA
ATGGCGCGCGGCGTTAACAAGGTAATTCTGATTGGTAACCTGGGGGCAGACCCGGAAACCCGTTTCATGCCCAGCGGTGG
CGCGGTCACCAATGTTCGTCTGGCTACCAGTGAAACCTGGAAGGACAAGCAGAGCGGGCAGATGCAGGAACGCACTGAAT
GGCACCGGGTGGTATTTTTCAACAAGCTGGGTGAAATTGCCGGTGAGTACCTGAAGAAGGGCTCCAAGGTCTATATCGAA
GGCTCCATTCGTACCCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGCTACACTACCGAAATCGTGGCCAACGAAATGCA
GATGCTGGATGGCCGTGGTGACGGCGGCGGTGGCCAGGGTGGCGGCTATGCGCCTCAGGGTAACCAGGGTGGTTACCAGA
ACCAGAACGAGAATTACGGTGGCGGCAGTGCCGCGCCGCAGCAGAATCAGAACCAGAACCCCGGTCAGAATCAAAATCAG
GGCGGCTTCAGTGGCCCGGCAGATGATTTTGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.191 |
100 |
0.574 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
47.458 |
100 |
0.477 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.754 |
100 |
0.364 |