Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMHYV_RS12205 Genome accession   NZ_CP179928
Coordinates   2743944..2745452 (+) Length   502 a.a.
NCBI ID   WP_414502163.1    Uniprot ID   -
Organism   Zymobacter sp. IVIA_5232.4 C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2738944..2750452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYV_RS12175 - 2740102..2740776 (+) 675 WP_414502159.1 energy-coupling factor ABC transporter ATP-binding protein -
  ACMHYV_RS12180 - 2740773..2741363 (+) 591 WP_414502160.1 energy-coupling factor transporter transmembrane component T family protein -
  ACMHYV_RS12185 - 2741443..2741979 (+) 537 WP_414502161.1 biotin transporter BioY -
  ACMHYV_RS12190 - 2742057..2742665 (-) 609 WP_027705182.1 trimeric intracellular cation channel family protein -
  ACMHYV_RS12195 glnK 2742786..2743124 (-) 339 WP_027705181.1 P-II family nitrogen regulator -
  ACMHYV_RS12200 - 2743494..2743796 (+) 303 WP_414502162.1 accessory factor UbiK family protein -
  ACMHYV_RS12205 comM 2743944..2745452 (+) 1509 WP_414502163.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMHYV_RS12210 - 2745564..2746343 (-) 780 WP_414502164.1 SDR family oxidoreductase -
  ACMHYV_RS12215 - 2746549..2747634 (-) 1086 WP_414502165.1 glycerophosphodiester phosphodiesterase -
  ACMHYV_RS12220 - 2747783..2748346 (-) 564 WP_414500185.1 hypothetical protein -
  ACMHYV_RS12225 - 2748343..2748738 (-) 396 WP_414502166.1 DUF423 domain-containing protein -
  ACMHYV_RS12230 trmB 2748971..2749684 (+) 714 WP_414500187.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACMHYV_RS12235 - 2749707..2750279 (+) 573 WP_414500188.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54566.01 Da        Isoelectric Point: 9.2142

>NTDB_id=1093902 ACMHYV_RS12205 WP_414502163.1 2743944..2745452(+) (comM) [Zymobacter sp. IVIA_5232.4 C2]
MALAILQSRAGVGLTAPRVCVEVHLSNGLPGLCIVGLPETTVKESRERVRSALLTSGFEFPARRITLNLAPADLPKQGGR
FDLPIALALLTASGQLDAEPLSQIECLGELALDGHLRPVRGVLPAAMAAAKAGHTLIVPTSNAREAALAPDLTLLAADHL
RQIVDHLNRRHPLPTVMPQPLPLATTELPDMADVHGQPLARRALEIAAAGGHHLLMIGPPGAGKTMLASRLPGLLPPLDI
HEALEVAALRSISGQPPLQQWGQRPFRAPHHTTTQAALLGGGNRADPGEISLAHRGILFLDELPEFERRVLEVLREPLES
GHVVVSRVAHTQRYPARCQLVAAMNPCPCGHHGDSLQRCRCTPHQISRYRHHISGPLLDRIDLQIQVPALPLSAMNTTRT
NEPSATIKERVMAARQRQQQRGALNAQLAPRLIDDACRLDTHQRQWATDTMTRLKLSARAYHRVLRVARTLADLAGQDQV
TQAHIIEAIGLRQWDRQTAAHN

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1093902 ACMHYV_RS12205 WP_414502163.1 2743944..2745452(+) (comM) [Zymobacter sp. IVIA_5232.4 C2]
ATGGCGCTGGCGATTCTGCAAAGCCGAGCGGGTGTCGGTCTGACCGCACCACGAGTCTGTGTCGAAGTCCATCTGTCCAA
CGGGCTGCCGGGACTCTGCATCGTCGGTCTTCCCGAAACAACCGTAAAGGAAAGCCGCGAGCGTGTACGCAGTGCACTGC
TGACGTCAGGCTTCGAATTTCCTGCTCGCCGCATCACTCTCAATCTTGCCCCCGCCGACCTGCCCAAGCAGGGTGGCCGC
TTTGACCTACCTATCGCACTGGCTCTGTTGACGGCCTCCGGCCAGTTGGATGCAGAACCACTTTCGCAGATCGAATGTCT
GGGAGAGCTGGCGCTTGACGGTCATCTGCGCCCCGTGCGCGGTGTTTTGCCTGCCGCAATGGCCGCCGCGAAAGCGGGCC
ATACCTTGATCGTGCCCACGTCGAATGCGCGTGAGGCCGCCTTGGCACCCGATCTGACGCTACTGGCCGCTGACCACCTG
CGCCAGATCGTCGATCACCTTAATCGTCGCCACCCACTTCCGACCGTTATGCCCCAGCCACTGCCTCTTGCCACCACCGA
GCTGCCAGACATGGCGGACGTGCATGGGCAACCGCTAGCACGCCGTGCGCTGGAGATCGCCGCAGCGGGCGGCCACCACC
TGCTGATGATCGGTCCTCCCGGCGCAGGCAAAACCATGCTGGCAAGCCGCTTGCCGGGCCTATTGCCACCGCTGGACATA
CATGAAGCACTCGAAGTGGCGGCGCTACGTTCGATCAGTGGACAACCGCCGTTGCAGCAGTGGGGACAACGTCCCTTTCG
TGCCCCGCACCACACAACGACGCAGGCCGCGCTGCTGGGCGGTGGCAACCGCGCCGATCCCGGAGAGATATCACTGGCGC
ACCGAGGCATCCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGGCGCGTGCTGGAGGTACTGCGCGAACCGCTCGAATCG
GGTCACGTTGTGGTATCGCGCGTGGCGCACACTCAGCGCTATCCCGCTCGCTGTCAGCTGGTGGCCGCCATGAACCCCTG
CCCGTGCGGCCACCATGGCGACTCGCTGCAACGCTGTCGCTGCACACCGCATCAGATCAGCCGCTATCGCCACCATATCT
CAGGTCCACTGCTCGACCGCATCGACCTGCAAATTCAGGTGCCCGCCCTGCCGCTCAGCGCTATGAACACGACACGCACC
AACGAACCCTCGGCCACGATAAAGGAGCGCGTGATGGCAGCCCGACAGCGTCAGCAGCAGCGCGGTGCACTCAACGCTCA
ACTGGCACCGCGCCTGATCGACGATGCCTGTCGACTTGATACCCATCAGCGCCAGTGGGCCACCGACACCATGACCCGCC
TCAAACTGTCCGCACGCGCCTACCACCGCGTACTGCGCGTGGCACGCACGCTGGCCGATCTTGCCGGACAAGATCAGGTG
ACGCAGGCGCATATCATCGAAGCCATCGGGCTACGTCAGTGGGACAGGCAAACTGCCGCCCACAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.575

100

0.522
  comM Glaesserella parasuis strain SC1401

50.988

100

0.514
  comM Haemophilus influenzae Rd KW20

51.093

100

0.512
  comM Vibrio campbellii strain DS40M4

50.8

99.602

0.506
  comM Legionella pneumophila str. Paris

48.491

99.004

0.48
  comM Legionella pneumophila strain ERS1305867

48.491

99.004

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.713

99.801

0.436

Multiple sequence alignment