Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMHYV_RS01710 Genome accession   NZ_CP179928
Coordinates   365557..366189 (+) Length   210 a.a.
NCBI ID   WP_414502442.1    Uniprot ID   -
Organism   Zymobacter sp. IVIA_5232.4 C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 360557..371189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYV_RS01700 rplQ 361262..361645 (+) 384 WP_027704537.1 50S ribosomal protein L17 -
  ACMHYV_RS01705 uvrA 362476..365316 (-) 2841 WP_414502441.1 excinuclease ABC subunit UvrA -
  ACMHYV_RS01710 ssb 365557..366189 (+) 633 WP_414502442.1 single-stranded DNA-binding protein Machinery gene
  ACMHYV_RS01715 - 366537..367016 (+) 480 WP_414500618.1 hypothetical protein -
  ACMHYV_RS01720 - 367144..367650 (+) 507 WP_414502443.1 hypothetical protein -
  ACMHYV_RS01725 - 367807..368694 (+) 888 WP_414502444.1 sugar nucleotide-binding protein -
  ACMHYV_RS01730 - 368889..369599 (+) 711 WP_414502445.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23059.94 Da        Isoelectric Point: 5.1943

>NTDB_id=1093890 ACMHYV_RS01710 WP_414502442.1 365557..366189(+) (ssb) [Zymobacter sp. IVIA_5232.4 C2]
MARGVNKVILIGNVGQDPDVRFLPSGNPVCNLRIATSDSWTDRQTGQRQERTEWHSVVLFNKLAEIAQQYVHKGSRLYIE
GRLQTRKWQGQDGQDRYSTEIVANDMQMLDSRGNAGGNDYPNNGGQQGGYQPQGGMNNGGQQQGNPYGQPQQQQQRSAAP
QQAQQPAQQQSQSFGGAPQQQGNPYGQPQQQNSGAPAPGGFDDFDDEIPF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1093890 ACMHYV_RS01710 WP_414502442.1 365557..366189(+) (ssb) [Zymobacter sp. IVIA_5232.4 C2]
ATGGCCCGTGGTGTAAACAAGGTCATCCTGATAGGCAACGTGGGTCAGGATCCGGACGTACGGTTCCTGCCCTCAGGCAA
CCCTGTGTGCAACCTGCGTATCGCTACCAGCGATAGCTGGACCGATCGTCAGACTGGACAGCGTCAGGAACGCACAGAAT
GGCATTCCGTTGTGCTGTTCAACAAGCTGGCGGAAATCGCACAGCAGTACGTTCACAAAGGCTCCCGTCTTTATATCGAA
GGTCGCCTGCAGACACGTAAATGGCAAGGCCAAGACGGTCAGGATCGCTATTCTACCGAGATCGTTGCCAACGATATGCA
AATGCTGGATTCACGTGGCAATGCGGGTGGCAACGACTATCCGAATAATGGGGGCCAGCAAGGCGGCTATCAACCCCAAG
GCGGCATGAATAATGGCGGCCAGCAGCAAGGCAATCCTTATGGTCAGCCTCAGCAGCAGCAACAGCGTAGTGCCGCGCCG
CAGCAAGCCCAGCAGCCTGCGCAGCAGCAGTCTCAGTCGTTTGGTGGTGCTCCGCAGCAGCAGGGTAACCCCTACGGTCA
GCCCCAGCAGCAGAACAGTGGTGCACCTGCGCCGGGCGGCTTCGATGATTTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.704

100

0.514
  ssb Glaesserella parasuis strain SC1401

43.192

100

0.438
  ssb Neisseria meningitidis MC58

43.204

98.095

0.424
  ssb Neisseria gonorrhoeae MS11

43.204

98.095

0.424

Multiple sequence alignment