Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | ACMGG8_RS04870 | Genome accession | NZ_CP179909 |
| Coordinates | 1068214..1069707 (-) | Length | 497 a.a. |
| NCBI ID | WP_414159253.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. BNK-45 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1028501..1077523 | 1068214..1069707 | within | 0 |
Gene organization within MGE regions
Location: 1028501..1077523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGG8_RS04685 (ACMGG8_04685) | rph | 1029427..1030149 (+) | 723 | WP_016964145.1 | ribonuclease PH | - |
| ACMGG8_RS04690 (ACMGG8_04690) | - | 1030180..1030548 (+) | 369 | WP_016964144.1 | DUF4870 domain-containing protein | - |
| ACMGG8_RS04695 (ACMGG8_04695) | - | 1030610..1031389 (-) | 780 | WP_011064227.1 | exodeoxyribonuclease III | - |
| ACMGG8_RS04700 (ACMGG8_04700) | pyrE | 1031471..1032115 (+) | 645 | WP_414159246.1 | orotate phosphoribosyltransferase | - |
| ACMGG8_RS04705 (ACMGG8_04705) | argB | 1032203..1033108 (-) | 906 | WP_011064225.1 | acetylglutamate kinase | - |
| ACMGG8_RS04710 (ACMGG8_04710) | - | 1033133..1034509 (-) | 1377 | Protein_925 | phosphomannomutase/phosphoglucomutase | - |
| ACMGG8_RS04715 (ACMGG8_04715) | dut | 1034795..1035250 (-) | 456 | WP_060841716.1 | dUTP diphosphatase | - |
| ACMGG8_RS04720 (ACMGG8_04720) | coaBC | 1035256..1036464 (-) | 1209 | WP_060841715.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| ACMGG8_RS04725 (ACMGG8_04725) | radC | 1036597..1037271 (+) | 675 | WP_060841714.1 | RadC family protein | - |
| ACMGG8_RS04730 (ACMGG8_04730) | - | 1037320..1038903 (-) | 1584 | WP_414159247.1 | ABC transporter substrate-binding protein | - |
| ACMGG8_RS04735 (ACMGG8_04735) | rpmB | 1039380..1039616 (+) | 237 | WP_011064219.1 | 50S ribosomal protein L28 | - |
| ACMGG8_RS04740 (ACMGG8_04740) | rpmG | 1039628..1039783 (+) | 156 | WP_003177274.1 | 50S ribosomal protein L33 | - |
| ACMGG8_RS04745 (ACMGG8_04745) | - | 1039842..1040204 (-) | 363 | WP_060841712.1 | cupin domain-containing protein | - |
| ACMGG8_RS04750 (ACMGG8_04750) | - | 1040443..1041936 (+) | 1494 | WP_060841711.1 | aldehyde dehydrogenase | - |
| ACMGG8_RS04755 (ACMGG8_04755) | - | 1042096..1043244 (+) | 1149 | WP_060841710.1 | MFS transporter | - |
| ACMGG8_RS04760 (ACMGG8_04760) | - | 1043279..1043692 (+) | 414 | WP_148659681.1 | hypothetical protein | - |
| ACMGG8_RS04765 (ACMGG8_04765) | - | 1043708..1045273 (-) | 1566 | WP_414159248.1 | phospholipase D family protein | - |
| ACMGG8_RS04770 (ACMGG8_04770) | - | 1045340..1046764 (-) | 1425 | WP_414159249.1 | PLP-dependent aminotransferase family protein | - |
| ACMGG8_RS04775 (ACMGG8_04775) | - | 1046945..1047187 (+) | 243 | WP_060841706.1 | DUF1127 domain-containing protein | - |
| ACMGG8_RS04780 (ACMGG8_04780) | - | 1047215..1048507 (-) | 1293 | WP_414159250.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACMGG8_RS04785 (ACMGG8_04785) | - | 1048656..1049009 (+) | 354 | WP_060841704.1 | YkgJ family cysteine cluster protein | - |
| ACMGG8_RS04790 (ACMGG8_04790) | - | 1049067..1049555 (-) | 489 | WP_011064210.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| ACMGG8_RS04795 (ACMGG8_04795) | dadA | 1049713..1051014 (+) | 1302 | WP_060841703.1 | D-amino acid dehydrogenase | - |
| ACMGG8_RS04800 (ACMGG8_04800) | - | 1050986..1051339 (+) | 354 | WP_060841702.1 | RidA family protein | - |
| ACMGG8_RS04805 (ACMGG8_04805) | alr | 1051432..1052505 (+) | 1074 | WP_060841701.1 | alanine racemase | - |
| ACMGG8_RS04810 (ACMGG8_04810) | - | 1052638..1053186 (+) | 549 | WP_015637462.1 | cupin domain-containing protein | - |
| ACMGG8_RS04815 (ACMGG8_04815) | - | 1053368..1053784 (+) | 417 | WP_011064205.1 | c-type cytochrome | - |
| ACMGG8_RS04820 (ACMGG8_04820) | - | 1053921..1055852 (+) | 1932 | WP_414159251.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| ACMGG8_RS04825 (ACMGG8_04825) | - | 1055966..1056538 (-) | 573 | WP_016968070.1 | xanthine phosphoribosyltransferase | - |
| ACMGG8_RS04830 (ACMGG8_04830) | rep | 1056594..1058603 (-) | 2010 | WP_060841699.1 | DNA helicase Rep | - |
| ACMGG8_RS04835 (ACMGG8_04835) | - | 1058871..1060544 (+) | 1674 | WP_060844955.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| ACMGG8_RS04840 (ACMGG8_04840) | - | 1060586..1061986 (-) | 1401 | WP_173655966.1 | NorM family multidrug efflux MATE transporter | - |
| ACMGG8_RS04845 (ACMGG8_04845) | - | 1062146..1063066 (+) | 921 | WP_060841696.1 | LysR substrate-binding domain-containing protein | - |
| ACMGG8_RS04850 (ACMGG8_04850) | - | 1063260..1065236 (+) | 1977 | WP_108545015.1 | methyl-accepting chemotaxis protein | - |
| ACMGG8_RS04855 (ACMGG8_04855) | - | 1065263..1066189 (-) | 927 | WP_414159252.1 | ABC transporter six-transmembrane domain-containing protein | - |
| ACMGG8_RS04860 (ACMGG8_04860) | - | 1066303..1066881 (+) | 579 | WP_060844953.1 | TetR/AcrR family transcriptional regulator | - |
| ACMGG8_RS04865 (ACMGG8_04865) | - | 1066995..1068209 (+) | 1215 | WP_060841692.1 | aldose 1-epimerase family protein | - |
| ACMGG8_RS04870 (ACMGG8_04870) | comM | 1068214..1069707 (-) | 1494 | WP_414159253.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| ACMGG8_RS04875 (ACMGG8_04875) | - | 1069895..1070155 (-) | 261 | WP_016965457.1 | accessory factor UbiK family protein | - |
| ACMGG8_RS04880 (ACMGG8_04880) | glnK | 1070571..1070909 (+) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| ACMGG8_RS04885 (ACMGG8_04885) | - | 1070943..1072280 (+) | 1338 | WP_060841689.1 | ammonium transporter | - |
| ACMGG8_RS04890 (ACMGG8_04890) | - | 1072491..1072916 (+) | 426 | WP_060841688.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ACMGG8_RS04895 (ACMGG8_04895) | sutA | 1073019..1073342 (+) | 324 | WP_016965454.1 | transcriptional regulator SutA | - |
| ACMGG8_RS04900 (ACMGG8_04900) | - | 1073485..1074180 (-) | 696 | WP_414159254.1 | HAD family hydrolase | - |
| ACMGG8_RS04905 (ACMGG8_04905) | xerC | 1074180..1075076 (-) | 897 | WP_060841686.1 | tyrosine recombinase XerC | - |
| ACMGG8_RS04910 (ACMGG8_04910) | - | 1075079..1075804 (-) | 726 | WP_060844951.1 | DUF484 family protein | - |
| ACMGG8_RS04915 (ACMGG8_04915) | dapF | 1075818..1076648 (-) | 831 | WP_047306595.1 | diaminopimelate epimerase | - |
Sequence
Protein
Download Length: 497 a.a. Molecular weight: 53093.89 Da Isoelectric Point: 7.9238
>NTDB_id=1093792 ACMGG8_RS04870 WP_414159253.1 1068214..1069707(-) (comM) [Pseudomonas sp. BNK-45]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPAQALDNIECLGELALSGAVRAVRGVLPAALAARDAGRTLLVPRANAEEACLASGLEVIAVEHL
LQAVAHLNGQAPIAPYISDGLTQSHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVTSHTPLRHWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIIISRARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALNPRPQT
GNDSAEAAARVARARQLQGQRQGCANAFLDLPGLRRHCQLSTADEHWLEAACERLNLSLRAAHRLLKVARTLADLEQAAS
ISRDHLAEALHYRPGAD
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPAQALDNIECLGELALSGAVRAVRGVLPAALAARDAGRTLLVPRANAEEACLASGLEVIAVEHL
LQAVAHLNGQAPIAPYISDGLTQSHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVTSHTPLRHWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIIISRARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALNPRPQT
GNDSAEAAARVARARQLQGQRQGCANAFLDLPGLRRHCQLSTADEHWLEAACERLNLSLRAAHRLLKVARTLADLEQAAS
ISRDHLAEALHYRPGAD
Nucleotide
Download Length: 1494 bp
>NTDB_id=1093792 ACMGG8_RS04870 WP_414159253.1 1068214..1069707(-) (comM) [Pseudomonas sp. BNK-45]
ATGTCCCTGGCGATCATTCACAGCCGTGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTTGAAGTGCACCTGGCCAA
TGGCTTGCCAAGCCTGACCCTGGTGGGCCTGCCGGAAGCTGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGGTTCGATTTCCCCGCGCGCCGCATCACCCTCAACCTGGCTCCGGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTACCGGCGCAGGCCCTGGACAACATCGAATGCCT
GGGGGAACTGGCGCTGTCCGGAGCAGTAAGGGCGGTGCGCGGCGTACTCCCTGCCGCACTGGCGGCGCGCGACGCCGGAC
GCACCCTGCTGGTGCCCCGCGCCAATGCCGAAGAAGCCTGCCTGGCCAGTGGCCTGGAGGTGATCGCGGTCGAGCATCTG
CTGCAAGCCGTGGCCCATCTCAACGGCCAGGCACCGATAGCGCCTTACATCAGCGACGGCCTGACACAGAGCCACTCCCC
CTACCCCGATCTTCGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCCTTGCTGATCGCCGCGGCCGGTGCCCACAACC
TGCTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCCCCCTTGCAGGAG
GACGAGGCCCTGGAAGTGGCGGCGATTCAATCGGTGACCAGCCACACGCCCCTGCGCCACTGGCCCCAGCGGCCGTTTCG
TCAGCCTCATCATTCGGCTTCGGGGGCGGCGCTGGTCGGAGGCGGCTCCAAACCCCAACCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCGGAGTTCGATCGCAAGGTATTGGAGGTCCTGCGCGAGCCCATGGAGTCC
GGGCAGATCATCATCTCCCGGGCCCGCGACCGGGTGCAGTTCCCGGCACGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGATACCTTGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGTCACCGCCCTCAACCCCAGGCCACAAACG
GGCAACGACAGCGCCGAAGCCGCCGCCAGAGTCGCCCGGGCACGCCAGCTGCAAGGCCAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGGCGCCATTGCCAGTTATCCACAGCCGACGAGCACTGGCTGGAAGCGGCCTGCGAAC
GCTTGAACCTGTCGTTGCGCGCCGCTCACCGCCTGCTCAAGGTGGCCAGGACCCTGGCCGACCTGGAGCAGGCGGCAAGC
ATCAGTCGCGACCATCTGGCAGAGGCGCTGCACTATCGTCCCGGCGCCGATTGA
ATGTCCCTGGCGATCATTCACAGCCGTGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTTGAAGTGCACCTGGCCAA
TGGCTTGCCAAGCCTGACCCTGGTGGGCCTGCCGGAAGCTGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGGTTCGATTTCCCCGCGCGCCGCATCACCCTCAACCTGGCTCCGGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTACCGGCGCAGGCCCTGGACAACATCGAATGCCT
GGGGGAACTGGCGCTGTCCGGAGCAGTAAGGGCGGTGCGCGGCGTACTCCCTGCCGCACTGGCGGCGCGCGACGCCGGAC
GCACCCTGCTGGTGCCCCGCGCCAATGCCGAAGAAGCCTGCCTGGCCAGTGGCCTGGAGGTGATCGCGGTCGAGCATCTG
CTGCAAGCCGTGGCCCATCTCAACGGCCAGGCACCGATAGCGCCTTACATCAGCGACGGCCTGACACAGAGCCACTCCCC
CTACCCCGATCTTCGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCCTTGCTGATCGCCGCGGCCGGTGCCCACAACC
TGCTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCCCCCTTGCAGGAG
GACGAGGCCCTGGAAGTGGCGGCGATTCAATCGGTGACCAGCCACACGCCCCTGCGCCACTGGCCCCAGCGGCCGTTTCG
TCAGCCTCATCATTCGGCTTCGGGGGCGGCGCTGGTCGGAGGCGGCTCCAAACCCCAACCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCGGAGTTCGATCGCAAGGTATTGGAGGTCCTGCGCGAGCCCATGGAGTCC
GGGCAGATCATCATCTCCCGGGCCCGCGACCGGGTGCAGTTCCCGGCACGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGATACCTTGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGTCACCGCCCTCAACCCCAGGCCACAAACG
GGCAACGACAGCGCCGAAGCCGCCGCCAGAGTCGCCCGGGCACGCCAGCTGCAAGGCCAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGGCGCCATTGCCAGTTATCCACAGCCGACGAGCACTGGCTGGAAGCGGCCTGCGAAC
GCTTGAACCTGTCGTTGCGCGCCGCTCACCGCCTGCTCAAGGTGGCCAGGACCCTGGCCGACCTGGAGCAGGCGGCAAGC
ATCAGTCGCGACCATCTGGCAGAGGCGCTGCACTATCGTCCCGGCGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.566 |
99.598 |
0.563 |
| comM | Vibrio cholerae strain A1552 |
56 |
100 |
0.563 |
| comM | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.563 |
| comM | Haemophilus influenzae Rd KW20 |
55.4 |
100 |
0.557 |
| comM | Legionella pneumophila str. Paris |
49.407 |
100 |
0.503 |
| comM | Legionella pneumophila strain ERS1305867 |
49.407 |
100 |
0.503 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
45.059 |
100 |
0.459 |