Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMGGN_RS21300 Genome accession   NZ_CP179904
Coordinates   4599398..4600888 (+) Length   496 a.a.
NCBI ID   WP_012312183.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-30     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4594398..4605888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGN_RS21275 (ACMGGN_21275) - 4596492..4596884 (+) 393 WP_204919338.1 hypothetical protein -
  ACMGGN_RS21280 (ACMGGN_21280) - 4597235..4597567 (+) 333 WP_204919336.1 DUF6572 domain-containing protein -
  ACMGGN_RS21285 (ACMGGN_21285) - 4598188..4598322 (+) 135 Protein_4179 hypothetical protein -
  ACMGGN_RS21290 (ACMGGN_21290) - 4598557..4598778 (-) 222 Protein_4180 IS66 family transposase -
  ACMGGN_RS21295 (ACMGGN_21295) - 4598848..4599267 (-) 420 WP_414156278.1 hypothetical protein -
  ACMGGN_RS21300 (ACMGGN_21300) comM 4599398..4600888 (+) 1491 WP_012312183.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMGGN_RS21305 (ACMGGN_21305) - 4601028..4601288 (+) 261 WP_115273307.1 DUF2790 domain-containing protein -
  ACMGGN_RS21310 (ACMGGN_21310) - 4601508..4602815 (+) 1308 WP_012312181.1 Nramp family divalent metal transporter -
  ACMGGN_RS21315 (ACMGGN_21315) - 4602861..4602992 (-) 132 WP_256658419.1 hypothetical protein -
  ACMGGN_RS21320 (ACMGGN_21320) - 4603480..4605267 (+) 1788 WP_237859735.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53110.87 Da        Isoelectric Point: 7.5644

>NTDB_id=1093690 ACMGGN_RS21300 WP_012312183.1 4599398..4600888(+) (comM) [Pseudomonas sp. BNK-30]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLTDIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPCG
ETSADVAARVAEAREVQHRRQGCANAFLDLEGLRRHCELCAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGASTI
ARAHLAEALQYRPGSH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1093690 ACMGGN_RS21300 WP_012312183.1 4599398..4600888(+) (comM) [Pseudomonas sp. BNK-30]
ATGTCCCTTGCCCTCGTCCACAGCCGCGCCCAGGTTGGCGTGCAGGCACCTGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCACCTCACCCTGGTCGGCCTGCCCGAAACCACCGTCAAGGAAAGCAAGGACCGGGTGCGTAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAAAGGCGCATCACCCAAAACCTGGCACCGGCAGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCTGACGGCCAGGTGCCGGTGGCCACATTGACCGACATCGAATGCCT
GGGCGAGCTGGCGCTTTCGGGCAAGCTGCGACCGGTGCAGGGCGTGCTGCCTGCTGCACTGGCGGCGCGGGAGGCTGGCC
GGGCACTGGTGGTGCCGCGGGAAAACGCCGAAGAGGCGAGCCTGGCGGGTGGGCTGGTGGTGTACGCCGTGGGGCACCTG
CTGGAACTGGTCGCGCACCTCAACGGCCAGGTGCCGCTGCCTCCCTTTGCCGCCAACGGTCTATTGCTGCACAGCCGCCC
TTACCCCGACCTCAGCGAGGTGCAGGGCCAGGTGGCCGCCAAGCGTGCCTTGCTGCTGGCGGCTTCAGGTGCGCATAACC
TACTGTTCACGGGGCCGCCCGGCACGGGCAAGACACTACTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CATGAAGCGCTGGAAGTGGCAGCCATCCAGTCGGTAAGCGGGCACAAACCGCTTGATAGCTGGCCGCAACGGCCGTTTCG
CCATCCGCACCACTCAGCGTCCGGGCCCGCGCTAGTAGGCGGAAGCAGCCGGCCACAACCCGGTGAAATCACCCTGGCGC
ACCATGGGGTACTGTTTCTGGATGAGCTGCCGGAGTTCGAGCGCCGTGTACTTGAGGTGCTTCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTGCCCGGGCACGGGACAAAGTACGCTTTCCGGCGCGCTTCCAATTGGTGGCGGCCATGAACCCCTG
CCCTTGCGGTTACCTGGGCGACCCCACGGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTACTGGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAACCACCACGCTCAACAATCAACCTTGCGGC
GAGACAAGTGCCGATGTGGCGGCCCGGGTGGCCGAGGCGCGCGAGGTGCAGCACCGGCGGCAAGGCTGTGCCAATGCGTT
TCTGGACCTCGAGGGGCTGCGCCGGCACTGTGAATTGTGCGCTGCCGACCAGGCCTGGCTGGAGAGTGCCTGCGAGCGCC
TGACGCTTTCCCTGCGCGCCGCACACAGGCTGTTGAAGGTAGCGCGCACGCTGGCCGACCTGGAGGGGGCCAGCACGATT
GCCAGGGCGCATCTGGCCGAAGCCCTGCAGTACCGGCCCGGTAGTCATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Glaesserella parasuis strain SC1401

54.183

100

0.548
  comM Legionella pneumophila str. Paris

49

100

0.494
  comM Legionella pneumophila strain ERS1305867

49

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.478

Multiple sequence alignment