Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMGGM_RS14900 Genome accession   NZ_CP179897
Coordinates   3130293..3130820 (+) Length   175 a.a.
NCBI ID   WP_063614489.1    Uniprot ID   -
Organism   Enterobacter sp. BNK-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3125293..3135820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGM_RS14880 (ACMGGM_14880) aphA 3125617..3126330 (+) 714 WP_014882148.1 acid phosphatase AphA -
  ACMGGM_RS14885 (ACMGGM_14885) - 3126444..3126860 (+) 417 WP_014882149.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACMGGM_RS14890 (ACMGGM_14890) - 3126863..3127216 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  ACMGGM_RS14895 (ACMGGM_14895) uvrA 3127219..3130041 (-) 2823 WP_063614488.1 excinuclease ABC subunit UvrA -
  ACMGGM_RS14900 (ACMGGM_14900) ssb 3130293..3130820 (+) 528 WP_063614489.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACMGGM_RS14905 (ACMGGM_14905) - 3130877..3131158 (-) 282 WP_063614490.1 YjcB family protein -
  ACMGGM_RS14910 (ACMGGM_14910) - 3131686..3133251 (+) 1566 WP_023336605.1 EAL domain-containing protein -
  ACMGGM_RS14915 (ACMGGM_14915) soxS 3133258..3133584 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  ACMGGM_RS14920 (ACMGGM_14920) soxR 3133683..3134141 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  ACMGGM_RS14925 (ACMGGM_14925) - 3134499..3135170 (+) 672 WP_023331807.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18751.76 Da        Isoelectric Point: 5.2456

>NTDB_id=1093533 ACMGGM_RS14900 WP_063614489.1 3130293..3130820(+) (ssb) [Enterobacter sp. BNK-14]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQSGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1093533 ACMGGM_RS14900 WP_063614489.1 3130293..3130820(+) (ssb) [Enterobacter sp. BNK-14]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGAGCGGTGGCGCGCCAGCAGGTGGTGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

47.191

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.36

Multiple sequence alignment