Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMGGM_RS12655 Genome accession   NZ_CP179897
Coordinates   2644657..2646177 (+) Length   506 a.a.
NCBI ID   WP_045135410.1    Uniprot ID   -
Organism   Enterobacter sp. BNK-14     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2639657..2651177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGM_RS12630 (ACMGGM_12630) ilvE 2641223..2642152 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  ACMGGM_RS12635 (ACMGGM_12635) ilvM 2642171..2642434 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ACMGGM_RS12640 (ACMGGM_12640) ilvG 2642431..2644077 (-) 1647 WP_045135411.1 acetolactate synthase 2 catalytic subunit -
  ACMGGM_RS12645 (ACMGGM_12645) ilvX 2644080..2644130 (-) 51 WP_201405605.1 peptide IlvX -
  ACMGGM_RS12650 (ACMGGM_12650) ilvL 2644217..2644315 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ACMGGM_RS12655 (ACMGGM_12655) comM 2644657..2646177 (+) 1521 WP_045135410.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMGGM_RS12660 (ACMGGM_12660) - 2646207..2646545 (-) 339 WP_014885680.1 DUF413 domain-containing protein -
  ACMGGM_RS12665 (ACMGGM_12665) hdfR 2646664..2647485 (+) 822 WP_014885681.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55037.06 Da        Isoelectric Point: 7.3092

>NTDB_id=1093528 ACMGGM_RS12655 WP_045135410.1 2644657..2646177(+) (comM) [Enterobacter sp. BNK-14]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDNVIADTPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQKGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNIEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCSDI
QRKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1093528 ACMGGM_RS12655 WP_045135410.1 2644657..2646177(+) (comM) [Enterobacter sp. BNK-14]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATCTGAGTAA
TGGGCTACCCGGGCTCACGCTCGTCGGGCTACCTGAAACGACGGTTAAAGAAGCCCGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTGGCTCCCGCCGATCTGCCCAAAGAGGGAGGACGA
TATGATTTACCTATCGCGATTGCGCTTCTCGCAGCCTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTACGAGTTTGT
GGGAGAACTCGCGCTCACAGGCGCGTTAAGGGGCGTTCCCGGTGCGATATCGGGCGCGCTGGAAGCTATACGCGCAGGGC
GGCAAATCATTGTCGCGAATGAAAATGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTTGTCGCAGGGCATTTA
CAGGAAGTTTGCGCCTGGCTGGAAGGGCGCCATGAACTGTCCGAGCCGGAAGAGTGTGACAATGTTATAGCCGATACCCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TTTTGATCGGCCCGCCTGGTACGGGTAAAACGATGCTGGCGAGCAGGCTGAGTGGCTTGCTGCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATTTATAGCCTTATCAGTTCTACCTCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCACCTCATCATAGCGCTTCACTGACGGCGATGGTCGGCGGTGGGTCTATTCCCGGGCCGGGTGAAATATCACTGGCGC
ACAATGGCATTCTGTTTCTCGACGAGCTGCCTGAGTTTGAGCGCCGCGTCCTGGATGCCCTGAGAGAACCCATTGAATCT
GGAGAGATACACATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAATCCCAG
CCCTACGGGTCATTATCAGGGCAACCATAACCGCTGTACGCCTGAGCAGACATTGCGCTATCTGGGAAAGTTATCCGGCC
CGTTTCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGCCTGCTCAGGCAAAAAGGCATCACGGGT
GAAAGCTCAGCAGATGTACGCGAGCGGGTCATTGCTGCCCAGACGCGACAATATGCCCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATAGAGGATGCGGTTTGGCTGGAGGAAACCTTGACGCGTT
TTGGTCTTTCTATACGCGCGTGGCAGCGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGTTGTAGTGACATT
CAGAGGAAACACTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTCCATCTGCAGAAGTTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443

Multiple sequence alignment