Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMGE4_RS11330 Genome accession   NZ_CP179735
Coordinates   2136289..2136807 (+) Length   172 a.a.
NCBI ID   WP_414045400.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM445     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2136289..2156035 2136289..2136807 within 0


Gene organization within MGE regions


Location: 2136289..2156035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE4_RS11330 (ACMGE4_11330) ssbA 2136289..2136807 (+) 519 WP_414045400.1 single-stranded DNA-binding protein Machinery gene
  ACMGE4_RS11335 (ACMGE4_11335) rpsR 2136841..2137083 (+) 243 WP_096077771.1 30S ribosomal protein S18 -
  ACMGE4_RS11340 (ACMGE4_11340) - 2137326..2137874 (+) 549 WP_414045401.1 YfbU family protein -
  ACMGE4_RS11345 (ACMGE4_11345) - 2137930..2138538 (-) 609 WP_414045402.1 GNAT family N-acetyltransferase -
  ACMGE4_RS11350 (ACMGE4_11350) - 2138621..2138839 (-) 219 WP_414045403.1 DUF2382 domain-containing protein -
  ACMGE4_RS11355 (ACMGE4_11355) - 2138957..2139958 (-) 1002 WP_414045404.1 DUF2382 domain-containing protein -
  ACMGE4_RS11360 (ACMGE4_11360) guaB 2140596..2142068 (+) 1473 WP_414045405.1 IMP dehydrogenase -
  ACMGE4_RS11365 (ACMGE4_11365) guaA 2142095..2143636 (+) 1542 WP_414045406.1 glutamine-hydrolyzing GMP synthase -
  ACMGE4_RS11370 (ACMGE4_11370) - 2143774..2144229 (-) 456 WP_414045407.1 type II toxin-antitoxin system death-on-curing family toxin -
  ACMGE4_RS11375 (ACMGE4_11375) - 2144226..2145239 (-) 1014 WP_414045408.1 hypothetical protein -
  ACMGE4_RS11380 (ACMGE4_11380) - 2145250..2146485 (-) 1236 WP_414045409.1 tyrosine-type recombinase/integrase -
  ACMGE4_RS11385 (ACMGE4_11385) - 2146489..2147100 (-) 612 WP_130921233.1 helix-turn-helix domain-containing protein -
  ACMGE4_RS11390 (ACMGE4_11390) - 2147226..2147432 (+) 207 WP_414045410.1 helix-turn-helix transcriptional regulator -
  ACMGE4_RS11395 (ACMGE4_11395) - 2147468..2147692 (+) 225 WP_414045411.1 helix-turn-helix transcriptional regulator -
  ACMGE4_RS11400 (ACMGE4_11400) - 2147692..2147967 (+) 276 WP_414045412.1 helix-turn-helix domain-containing protein -
  ACMGE4_RS11405 (ACMGE4_11405) - 2147982..2148152 (+) 171 WP_414045413.1 hypothetical protein -
  ACMGE4_RS11410 (ACMGE4_11410) - 2148155..2148637 (+) 483 WP_414045414.1 hypothetical protein -
  ACMGE4_RS11415 (ACMGE4_11415) - 2148640..2148942 (+) 303 WP_414045415.1 hypothetical protein -
  ACMGE4_RS11420 (ACMGE4_11420) - 2149008..2149928 (+) 921 WP_414045416.1 DnaD domain protein -
  ACMGE4_RS11425 (ACMGE4_11425) - 2149931..2150737 (+) 807 WP_414045417.1 ATP-binding protein -
  ACMGE4_RS11430 (ACMGE4_11430) - 2150863..2151117 (+) 255 WP_414045418.1 hypothetical protein -
  ACMGE4_RS11435 (ACMGE4_11435) - 2151380..2151958 (+) 579 WP_414045419.1 hypothetical protein -
  ACMGE4_RS11440 (ACMGE4_11440) - 2151958..2152218 (+) 261 WP_130921225.1 hypothetical protein -
  ACMGE4_RS11445 (ACMGE4_11445) - 2152283..2152705 (+) 423 WP_414045420.1 terminase small subunit -
  ACMGE4_RS11450 (ACMGE4_11450) - 2152739..2153227 (+) 489 WP_414045421.1 terminase small subunit -
  ACMGE4_RS11455 (ACMGE4_11455) - 2153243..2153755 (+) 513 WP_414045422.1 spore coat protein -
  ACMGE4_RS11460 (ACMGE4_11460) - 2153752..2154123 (+) 372 WP_414045423.1 hypothetical protein -
  ACMGE4_RS11465 (ACMGE4_11465) - 2154340..2155071 (+) 732 WP_414045424.1 hypothetical protein -
  ACMGE4_RS11470 (ACMGE4_11470) - 2155667..2156035 (+) 369 WP_414045425.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18999.60 Da        Isoelectric Point: 4.6856

>NTDB_id=1093134 ACMGE4_RS11330 WP_414045400.1 2136289..2136807(+) (ssbA) [Macrococcus sp. 18KM445]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDPGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1093134 ACMGE4_RS11330 WP_414045400.1 2136289..2136807(+) (ssbA) [Macrococcus sp. 18KM445]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGTAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATCCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.556

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

54.802

100

0.564
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366
  ssb Vibrio cholerae strain A1552

34.444

100

0.36

Multiple sequence alignment