Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACMGE5_RS03180 | Genome accession | NZ_CP179734 |
| Coordinates | 579899..580417 (+) | Length | 172 a.a. |
| NCBI ID | WP_414045400.1 | Uniprot ID | - |
| Organism | Macrococcus sp. 18KM444 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 573602..599645 | 579899..580417 | within | 0 |
Gene organization within MGE regions
Location: 573602..599645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGE5_RS03135 (ACMGE5_03135) | rsmG | 573602..574318 (+) | 717 | WP_414045392.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| ACMGE5_RS03140 (ACMGE5_03140) | noc | 574367..575212 (+) | 846 | WP_414045393.1 | nucleoid occlusion protein | - |
| ACMGE5_RS03145 (ACMGE5_03145) | - | 575325..576086 (+) | 762 | WP_414045394.1 | ParA family protein | - |
| ACMGE5_RS03150 (ACMGE5_03150) | - | 576079..576927 (+) | 849 | WP_414045395.1 | ParB/RepB/Spo0J family partition protein | - |
| ACMGE5_RS03155 (ACMGE5_03155) | - | 576937..577824 (+) | 888 | WP_414045396.1 | mechanosensitive ion channel family protein | - |
| ACMGE5_RS03160 (ACMGE5_03160) | - | 577814..578005 (+) | 192 | WP_414045397.1 | DUF951 domain-containing protein | - |
| ACMGE5_RS03165 (ACMGE5_03165) | ychF | 578018..579118 (+) | 1101 | WP_414045398.1 | redox-regulated ATPase YchF | - |
| ACMGE5_RS03170 (ACMGE5_03170) | - | 579137..579460 (+) | 324 | WP_414045399.1 | hypothetical protein | - |
| ACMGE5_RS03175 (ACMGE5_03175) | rpsF | 579584..579874 (+) | 291 | WP_096077769.1 | 30S ribosomal protein S6 | - |
| ACMGE5_RS03180 (ACMGE5_03180) | ssbA | 579899..580417 (+) | 519 | WP_414045400.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMGE5_RS03185 (ACMGE5_03185) | rpsR | 580451..580693 (+) | 243 | WP_096077771.1 | 30S ribosomal protein S18 | - |
| ACMGE5_RS03190 (ACMGE5_03190) | - | 580936..581484 (+) | 549 | WP_414045401.1 | YfbU family protein | - |
| ACMGE5_RS03195 (ACMGE5_03195) | - | 581540..582148 (-) | 609 | WP_414045402.1 | GNAT family N-acetyltransferase | - |
| ACMGE5_RS03200 (ACMGE5_03200) | - | 582231..582449 (-) | 219 | WP_414045403.1 | DUF2382 domain-containing protein | - |
| ACMGE5_RS03205 (ACMGE5_03205) | - | 582567..583568 (-) | 1002 | WP_414045404.1 | DUF2382 domain-containing protein | - |
| ACMGE5_RS03210 (ACMGE5_03210) | guaB | 584206..585678 (+) | 1473 | WP_414045405.1 | IMP dehydrogenase | - |
| ACMGE5_RS03215 (ACMGE5_03215) | guaA | 585705..587246 (+) | 1542 | WP_414045406.1 | glutamine-hydrolyzing GMP synthase | - |
| ACMGE5_RS03220 (ACMGE5_03220) | - | 587384..587839 (-) | 456 | WP_414045407.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| ACMGE5_RS03225 (ACMGE5_03225) | - | 587836..588849 (-) | 1014 | WP_414045408.1 | hypothetical protein | - |
| ACMGE5_RS03230 (ACMGE5_03230) | - | 588860..590095 (-) | 1236 | WP_414045409.1 | tyrosine-type recombinase/integrase | - |
| ACMGE5_RS03235 (ACMGE5_03235) | - | 590099..590710 (-) | 612 | WP_130921233.1 | helix-turn-helix domain-containing protein | - |
| ACMGE5_RS03240 (ACMGE5_03240) | - | 590836..591042 (+) | 207 | WP_414045410.1 | helix-turn-helix transcriptional regulator | - |
| ACMGE5_RS03245 (ACMGE5_03245) | - | 591078..591302 (+) | 225 | WP_414045411.1 | helix-turn-helix transcriptional regulator | - |
| ACMGE5_RS03250 (ACMGE5_03250) | - | 591302..591577 (+) | 276 | WP_414045412.1 | helix-turn-helix domain-containing protein | - |
| ACMGE5_RS03255 (ACMGE5_03255) | - | 591592..591762 (+) | 171 | WP_414045413.1 | hypothetical protein | - |
| ACMGE5_RS03260 (ACMGE5_03260) | - | 591765..592247 (+) | 483 | WP_414045414.1 | hypothetical protein | - |
| ACMGE5_RS03265 (ACMGE5_03265) | - | 592250..592552 (+) | 303 | WP_414045415.1 | hypothetical protein | - |
| ACMGE5_RS03270 (ACMGE5_03270) | - | 592618..593538 (+) | 921 | WP_414045416.1 | DnaD domain protein | - |
| ACMGE5_RS03275 (ACMGE5_03275) | - | 593541..594347 (+) | 807 | WP_414045417.1 | ATP-binding protein | - |
| ACMGE5_RS03280 (ACMGE5_03280) | - | 594473..594727 (+) | 255 | WP_414045418.1 | hypothetical protein | - |
| ACMGE5_RS03285 (ACMGE5_03285) | - | 594990..595568 (+) | 579 | WP_414045419.1 | hypothetical protein | - |
| ACMGE5_RS03290 (ACMGE5_03290) | - | 595568..595828 (+) | 261 | WP_130921225.1 | hypothetical protein | - |
| ACMGE5_RS03295 (ACMGE5_03295) | - | 595893..596315 (+) | 423 | WP_414045420.1 | terminase small subunit | - |
| ACMGE5_RS03300 (ACMGE5_03300) | - | 596349..596837 (+) | 489 | WP_414045421.1 | terminase small subunit | - |
| ACMGE5_RS03305 (ACMGE5_03305) | - | 596862..597365 (+) | 504 | WP_414046910.1 | spore coat protein | - |
| ACMGE5_RS03310 (ACMGE5_03310) | - | 597362..597733 (+) | 372 | WP_414045423.1 | hypothetical protein | - |
| ACMGE5_RS03315 (ACMGE5_03315) | - | 597950..598681 (+) | 732 | WP_414045424.1 | hypothetical protein | - |
| ACMGE5_RS03320 (ACMGE5_03320) | - | 599277..599645 (+) | 369 | WP_414045425.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18999.60 Da Isoelectric Point: 4.6856
>NTDB_id=1093081 ACMGE5_RS03180 WP_414045400.1 579899..580417(+) (ssbA) [Macrococcus sp. 18KM444]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDPGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDPGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1093081 ACMGE5_RS03180 WP_414045400.1 579899..580417(+) (ssbA) [Macrococcus sp. 18KM444]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGTAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATCCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGTAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATCCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.556 |
100 |
0.634 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.802 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
34.783 |
100 |
0.372 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |
| ssb | Vibrio cholerae strain A1552 |
34.444 |
100 |
0.36 |