Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMGE6_RS04725 Genome accession   NZ_CP179732
Coordinates   890150..890668 (+) Length   172 a.a.
NCBI ID   WP_414054633.1    Uniprot ID   -
Organism   Macrococcus sp. 21KM1573     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 883852..907382 890150..890668 within 0


Gene organization within MGE regions


Location: 883852..907382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE6_RS04680 (ACMGE6_04680) rsmG 883852..884568 (+) 717 WP_414054631.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACMGE6_RS04685 (ACMGE6_04685) noc 884618..885463 (+) 846 WP_414047390.1 nucleoid occlusion protein -
  ACMGE6_RS04690 (ACMGE6_04690) - 885576..886337 (+) 762 WP_414045394.1 ParA family protein -
  ACMGE6_RS04695 (ACMGE6_04695) - 886330..887178 (+) 849 WP_414047389.1 ParB/RepB/Spo0J family partition protein -
  ACMGE6_RS04700 (ACMGE6_04700) - 887188..888075 (+) 888 WP_414045396.1 mechanosensitive ion channel family protein -
  ACMGE6_RS04705 (ACMGE6_04705) - 888065..888256 (+) 192 WP_414045397.1 DUF951 domain-containing protein -
  ACMGE6_RS04710 (ACMGE6_04710) ychF 888269..889369 (+) 1101 WP_414054632.1 redox-regulated ATPase YchF -
  ACMGE6_RS04715 (ACMGE6_04715) - 889388..889711 (+) 324 WP_414047387.1 hypothetical protein -
  ACMGE6_RS04720 (ACMGE6_04720) rpsF 889835..890125 (+) 291 WP_096077769.1 30S ribosomal protein S6 -
  ACMGE6_RS04725 (ACMGE6_04725) ssbA 890150..890668 (+) 519 WP_414054633.1 single-stranded DNA-binding protein Machinery gene
  ACMGE6_RS04730 (ACMGE6_04730) rpsR 890702..890944 (+) 243 WP_096077771.1 30S ribosomal protein S18 -
  ACMGE6_RS04735 (ACMGE6_04735) - 891188..891736 (+) 549 WP_414045401.1 YfbU family protein -
  ACMGE6_RS04740 (ACMGE6_04740) - 891796..892404 (-) 609 WP_414054634.1 GNAT family N-acetyltransferase -
  ACMGE6_RS04745 (ACMGE6_04745) - 892487..892705 (-) 219 WP_414054635.1 DUF2382 domain-containing protein -
  ACMGE6_RS04750 (ACMGE6_04750) - 892823..893824 (-) 1002 WP_414054636.1 DUF2382 domain-containing protein -
  ACMGE6_RS04755 (ACMGE6_04755) guaB 894462..895934 (+) 1473 WP_414045405.1 IMP dehydrogenase -
  ACMGE6_RS04760 (ACMGE6_04760) guaA 895961..897502 (+) 1542 WP_414045406.1 glutamine-hydrolyzing GMP synthase -
  ACMGE6_RS04765 (ACMGE6_04765) - 897602..898363 (-) 762 WP_414054637.1 hypothetical protein -
  ACMGE6_RS04770 (ACMGE6_04770) - 898366..899604 (-) 1239 WP_414054638.1 tyrosine-type recombinase/integrase -
  ACMGE6_RS04775 (ACMGE6_04775) - 899622..900431 (-) 810 WP_414054639.1 helix-turn-helix domain-containing protein -
  ACMGE6_RS04780 (ACMGE6_04780) - 900635..900826 (+) 192 WP_414054640.1 helix-turn-helix transcriptional regulator -
  ACMGE6_RS04785 (ACMGE6_04785) - 900830..901093 (+) 264 WP_414054641.1 hypothetical protein -
  ACMGE6_RS04790 (ACMGE6_04790) - 901204..901932 (+) 729 WP_414054642.1 conserved phage C-terminal domain-containing protein -
  ACMGE6_RS04795 (ACMGE6_04795) - 901934..902269 (+) 336 WP_414054643.1 hypothetical protein -
  ACMGE6_RS04800 (ACMGE6_04800) - 902253..903497 (+) 1245 WP_414054644.1 replicative DNA helicase -
  ACMGE6_RS04805 (ACMGE6_04805) - 903545..903694 (+) 150 WP_414054645.1 hypothetical protein -
  ACMGE6_RS04810 (ACMGE6_04810) - 903940..904293 (+) 354 WP_414054646.1 hypothetical protein -
  ACMGE6_RS04815 (ACMGE6_04815) - 904283..904528 (+) 246 WP_414054647.1 hypothetical protein -
  ACMGE6_RS04820 (ACMGE6_04820) - 904541..905080 (+) 540 WP_414054648.1 hypothetical protein -
  ACMGE6_RS04825 (ACMGE6_04825) - 905329..905844 (+) 516 WP_414054649.1 hypothetical protein -
  ACMGE6_RS04830 (ACMGE6_04830) - 905974..906621 (+) 648 WP_414054650.1 hypothetical protein -
  ACMGE6_RS04835 (ACMGE6_04835) - 906642..907382 (+) 741 WP_414054651.1 Panacea domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18989.56 Da        Isoelectric Point: 4.6856

>NTDB_id=1093052 ACMGE6_RS04725 WP_414054633.1 890150..890668(+) (ssbA) [Macrococcus sp. 21KM1573]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDSGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1093052 ACMGE6_RS04725 WP_414054633.1 890150..890668(+) (ssbA) [Macrococcus sp. 21KM1573]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGCAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATTCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.556

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

54.802

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366
  ssb Vibrio cholerae strain A1552

34.444

100

0.36

Multiple sequence alignment