Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACMGE7_RS11785 | Genome accession | NZ_CP179731 |
| Coordinates | 2280737..2281255 (-) | Length | 172 a.a. |
| NCBI ID | WP_414045400.1 | Uniprot ID | - |
| Organism | Macrococcus sp. 18KM245 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2260683..2305051 | 2280737..2281255 | within | 0 |
Gene organization within MGE regions
Location: 2260683..2305051
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGE7_RS11635 (ACMGE7_11635) | - | 2260683..2261024 (-) | 342 | WP_414047359.1 | nuclear transport factor 2 family protein | - |
| ACMGE7_RS11640 (ACMGE7_11640) | - | 2261635..2262255 (-) | 621 | WP_414047360.1 | hypothetical protein | - |
| ACMGE7_RS11645 (ACMGE7_11645) | - | 2262242..2262967 (-) | 726 | WP_414047361.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACMGE7_RS11650 (ACMGE7_11650) | - | 2262967..2263293 (-) | 327 | WP_414047362.1 | hypothetical protein | - |
| ACMGE7_RS11655 (ACMGE7_11655) | - | 2263818..2264018 (-) | 201 | WP_414047363.1 | LSM domain protein | - |
| ACMGE7_RS11660 (ACMGE7_11660) | - | 2264033..2264236 (-) | 204 | WP_414047364.1 | hypothetical protein | - |
| ACMGE7_RS11665 (ACMGE7_11665) | - | 2264254..2264463 (-) | 210 | WP_414047365.1 | hypothetical protein | - |
| ACMGE7_RS11670 (ACMGE7_11670) | - | 2264542..2264775 (-) | 234 | WP_414047366.1 | hypothetical protein | - |
| ACMGE7_RS11675 (ACMGE7_11675) | - | 2264768..2265307 (-) | 540 | WP_414047367.1 | terminase small subunit | - |
| ACMGE7_RS11680 (ACMGE7_11680) | - | 2265371..2265562 (-) | 192 | WP_414047368.1 | hypothetical protein | - |
| ACMGE7_RS11685 (ACMGE7_11685) | - | 2265565..2266143 (-) | 579 | WP_414047369.1 | hypothetical protein | - |
| ACMGE7_RS11690 (ACMGE7_11690) | - | 2266242..2266715 (-) | 474 | WP_414047370.1 | hypothetical protein | - |
| ACMGE7_RS11695 (ACMGE7_11695) | - | 2266722..2266916 (-) | 195 | WP_414047371.1 | hypothetical protein | - |
| ACMGE7_RS11700 (ACMGE7_11700) | - | 2266922..2267254 (-) | 333 | WP_414047372.1 | pathogenicity island protein | - |
| ACMGE7_RS11705 (ACMGE7_11705) | - | 2267607..2269160 (-) | 1554 | WP_414047373.1 | DUF927 domain-containing protein | - |
| ACMGE7_RS11710 (ACMGE7_11710) | - | 2269282..2270115 (-) | 834 | WP_414047374.1 | primase C-terminal domain-containing protein | - |
| ACMGE7_RS11715 (ACMGE7_11715) | - | 2270160..2270456 (-) | 297 | WP_414047375.1 | hypothetical protein | - |
| ACMGE7_RS11720 (ACMGE7_11720) | - | 2270456..2270629 (-) | 174 | WP_414047376.1 | hypothetical protein | - |
| ACMGE7_RS11725 (ACMGE7_11725) | - | 2270646..2270921 (-) | 276 | WP_414047377.1 | helix-turn-helix domain-containing protein | - |
| ACMGE7_RS11730 (ACMGE7_11730) | - | 2270921..2271136 (-) | 216 | WP_414047378.1 | helix-turn-helix domain-containing protein | - |
| ACMGE7_RS11735 (ACMGE7_11735) | - | 2271273..2271920 (+) | 648 | WP_414047379.1 | helix-turn-helix domain-containing protein | - |
| ACMGE7_RS11740 (ACMGE7_11740) | - | 2271934..2273169 (+) | 1236 | WP_414047380.1 | tyrosine-type recombinase/integrase | - |
| ACMGE7_RS11745 (ACMGE7_11745) | - | 2273166..2273807 (+) | 642 | WP_414047381.1 | hypothetical protein | - |
| ACMGE7_RS11750 (ACMGE7_11750) | guaA | 2273908..2275449 (-) | 1542 | WP_414045406.1 | glutamine-hydrolyzing GMP synthase | - |
| ACMGE7_RS11755 (ACMGE7_11755) | guaB | 2275476..2276948 (-) | 1473 | WP_414045405.1 | IMP dehydrogenase | - |
| ACMGE7_RS11760 (ACMGE7_11760) | - | 2277442..2278587 (+) | 1146 | WP_414047382.1 | DUF2382 domain-containing protein | - |
| ACMGE7_RS11765 (ACMGE7_11765) | - | 2278705..2278923 (+) | 219 | WP_414047383.1 | DUF2382 domain-containing protein | - |
| ACMGE7_RS11770 (ACMGE7_11770) | - | 2279006..2279614 (+) | 609 | WP_414047384.1 | GNAT family N-acetyltransferase | - |
| ACMGE7_RS11775 (ACMGE7_11775) | - | 2279670..2280218 (-) | 549 | WP_414047385.1 | YfbU family protein | - |
| ACMGE7_RS11780 (ACMGE7_11780) | rpsR | 2280461..2280703 (-) | 243 | WP_096077771.1 | 30S ribosomal protein S18 | - |
| ACMGE7_RS11785 (ACMGE7_11785) | ssbA | 2280737..2281255 (-) | 519 | WP_414045400.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMGE7_RS11790 (ACMGE7_11790) | rpsF | 2281280..2281570 (-) | 291 | WP_414047386.1 | 30S ribosomal protein S6 | - |
| ACMGE7_RS11795 (ACMGE7_11795) | - | 2281694..2282017 (-) | 324 | WP_414047387.1 | hypothetical protein | - |
| ACMGE7_RS11800 (ACMGE7_11800) | ychF | 2282036..2283136 (-) | 1101 | WP_414047388.1 | redox-regulated ATPase YchF | - |
| ACMGE7_RS11805 (ACMGE7_11805) | - | 2283149..2283340 (-) | 192 | WP_414045397.1 | DUF951 domain-containing protein | - |
| ACMGE7_RS11810 (ACMGE7_11810) | - | 2283330..2284217 (-) | 888 | WP_414045396.1 | mechanosensitive ion channel family protein | - |
| ACMGE7_RS11815 (ACMGE7_11815) | - | 2284227..2285075 (-) | 849 | WP_414047389.1 | ParB/RepB/Spo0J family partition protein | - |
| ACMGE7_RS11820 (ACMGE7_11820) | - | 2285068..2285829 (-) | 762 | WP_414045394.1 | ParA family protein | - |
| ACMGE7_RS11825 (ACMGE7_11825) | noc | 2285942..2286787 (-) | 846 | WP_414047390.1 | nucleoid occlusion protein | - |
| ACMGE7_RS11830 (ACMGE7_11830) | rsmG | 2286836..2287552 (-) | 717 | WP_414047391.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| ACMGE7_RS11835 (ACMGE7_11835) | mnmG | 2287553..2289427 (-) | 1875 | WP_414047392.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| ACMGE7_RS11840 (ACMGE7_11840) | mnmE | 2289440..2290822 (-) | 1383 | WP_414047393.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| ACMGE7_RS11845 (ACMGE7_11845) | jag | 2290954..2291736 (-) | 783 | WP_414045389.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| ACMGE7_RS11850 (ACMGE7_11850) | rnpA | 2291758..2292105 (-) | 348 | WP_414045388.1 | ribonuclease P protein component | - |
| ACMGE7_RS11855 (ACMGE7_11855) | rpmH | 2292209..2292346 (-) | 138 | WP_041636245.1 | 50S ribosomal protein L34 | - |
| ACMGE7_RS11860 (ACMGE7_11860) | dnaA | 2292818..2294149 (+) | 1332 | WP_414045387.1 | chromosomal replication initiator protein DnaA | - |
| ACMGE7_RS11865 (ACMGE7_11865) | dnaN | 2294325..2295458 (+) | 1134 | WP_414045386.1 | DNA polymerase III subunit beta | - |
| ACMGE7_RS11870 (ACMGE7_11870) | - | 2295571..2296467 (+) | 897 | WP_414045385.1 | ABC transporter ATP-binding protein | - |
| ACMGE7_RS11875 (ACMGE7_11875) | - | 2296460..2297701 (+) | 1242 | WP_414047394.1 | ABC transporter permease | - |
| ACMGE7_RS11880 (ACMGE7_11880) | - | 2297820..2298536 (+) | 717 | WP_414047395.1 | DsbA family protein | - |
| ACMGE7_RS11885 (ACMGE7_11885) | - | 2298536..2298955 (+) | 420 | WP_414045382.1 | disulfide oxidoreductase | - |
| ACMGE7_RS11890 (ACMGE7_11890) | yaaA | 2299103..2299321 (+) | 219 | WP_414045381.1 | S4 domain-containing protein YaaA | - |
| ACMGE7_RS11895 (ACMGE7_11895) | recF | 2299321..2300430 (+) | 1110 | WP_414047396.1 | DNA replication/repair protein RecF | - |
| ACMGE7_RS11900 (ACMGE7_11900) | gyrB | 2300447..2302360 (+) | 1914 | WP_414047397.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ACMGE7_RS11905 (ACMGE7_11905) | gyrA | 2302388..2305051 (+) | 2664 | WP_414047398.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18999.60 Da Isoelectric Point: 4.6856
>NTDB_id=1093037 ACMGE7_RS11785 WP_414045400.1 2280737..2281255(-) (ssbA) [Macrococcus sp. 18KM245]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDPGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQGRSNNDPGQDYSSYDQGNYGQQTQGQNYQSNNQQQSNTSAPSTNPFANAT
GPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1093037 ACMGE7_RS11785 WP_414045400.1 2280737..2281255(-) (ssbA) [Macrococcus sp. 18KM245]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGTAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATCCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTTGC
TACATTTACATTAGCAGTTAATCGCACATTCACAAATGCGCAAGGTGAAAGACAAGCTGATTTTATCAACTGTGTTGTTT
TCCGTAAGCAAGCTGAGAATGTGAATAACTTCTTAAGCAAGGGTAGCTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAGGAAGGCCGTAGAGTATATGTAACGGAAGTCGTTTGTGATTCAGTACAGTTCTTAGAACCGAAAAA
CGCAAATCAAGGCCGTTCTAATAATGATCCAGGTCAGGACTATTCTAGTTATGATCAAGGAAATTATGGACAACAAACTC
AAGGTCAGAATTATCAATCGAATAATCAACAACAATCAAATACATCAGCACCTTCAACGAATCCATTTGCAAATGCAACT
GGACCAATTGATATTAGTGATGATGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.556 |
100 |
0.634 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.802 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
34.783 |
100 |
0.372 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |
| ssb | Vibrio cholerae strain A1552 |
34.444 |
100 |
0.36 |