Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLSSQ_RS00605 Genome accession   NZ_CP179682
Coordinates   111933..113441 (-) Length   502 a.a.
NCBI ID   WP_205229579.1    Uniprot ID   -
Organism   Azospira sp. APE16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 106933..118441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSSQ_RS00600 (ACLSSQ_00600) - 110672..111865 (-) 1194 WP_416243494.1 multidrug effflux MFS transporter -
  ACLSSQ_RS00605 (ACLSSQ_00605) comM 111933..113441 (-) 1509 WP_205229579.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLSSQ_RS00610 (ACLSSQ_00610) - 113526..113762 (-) 237 WP_130459667.1 accessory factor UbiK family protein -
  ACLSSQ_RS00615 (ACLSSQ_00615) - 114080..114865 (+) 786 WP_416243495.1 TorF family putative porin -
  ACLSSQ_RS00620 (ACLSSQ_00620) glnK 114926..115264 (+) 339 WP_014235874.1 P-II family nitrogen regulator -
  ACLSSQ_RS00625 (ACLSSQ_00625) amt 115278..116678 (+) 1401 WP_014235873.1 ammonium transporter -
  ACLSSQ_RS00630 (ACLSSQ_00630) purU 116908..117768 (-) 861 WP_014235872.1 formyltetrahydrofolate deformylase -
  ACLSSQ_RS00635 (ACLSSQ_00635) thrH 117776..118384 (-) 609 WP_014235871.1 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53726.65 Da        Isoelectric Point: 7.7771

>NTDB_id=1092546 ACLSSQ_RS00605 WP_205229579.1 111933..113441(-) (comM) [Azospira sp. APE16]
MPLALVHSRALAGMEAPPVAVEVHLANGLPGFTLVGLPEAEVKEARDRVRAALITSGFEFPAKRVTVNLAPADLPKESGR
YDLAIALGLLAASGQIPAARLDQYEFVGELSLSGELRPVRGVLPMALAAARAARAFVLPLADGAEAAWVRRAHPDTSILP
AASLLAVCAHLHGQELLAEQPEPPPPAPDAYPDLRDVKGQAQAKRALEIAAAGGHSLLFSGPPGTGKSMLAARLPGLLPP
MSEAEALESAAILSLGRQFRPEAFSRRVMRSPHHTSSAIALVGGGAQPRPGEISLAHHGVLFLDELPEFDRRVLEALREP
LESGHIHVSRAASRADFPARFQLVAAMNPCPCGYRGHPRRLCRCTPDQVARYRGRLSGPLLDRIDLLLEVPDLGAEELQA
APDGESSAQVRQRVVLARERQLQRQGVCNARLEGSELEYHCRPDADGAALLQQAVRRLDLSPRAYHRVLRVARSIADLAA
APQIGAAQVAEALHYRRNETPG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1092546 ACLSSQ_RS00605 WP_205229579.1 111933..113441(-) (comM) [Azospira sp. APE16]
ATGCCCCTCGCCCTCGTCCATAGCCGCGCCCTGGCAGGCATGGAAGCGCCGCCGGTGGCCGTGGAGGTGCACCTGGCCAA
CGGCCTGCCGGGCTTCACCCTGGTGGGCCTGCCGGAAGCGGAGGTGAAGGAGGCCCGGGACCGGGTGCGGGCCGCCCTCA
TCACCAGCGGCTTCGAGTTCCCGGCCAAGCGGGTCACGGTGAACCTGGCCCCGGCCGACCTGCCCAAGGAATCGGGCCGC
TACGACCTGGCCATCGCCCTCGGCCTGCTGGCCGCCTCCGGCCAGATTCCCGCCGCCCGGCTGGACCAGTATGAATTCGT
CGGCGAACTGTCCCTGTCCGGCGAATTGCGTCCCGTGCGCGGCGTCCTGCCCATGGCCCTGGCCGCCGCCCGGGCGGCAC
GGGCCTTCGTCCTGCCCCTGGCCGACGGCGCCGAGGCTGCCTGGGTCCGCCGCGCCCATCCCGACACCTCCATCCTCCCC
GCTGCCAGCCTGCTGGCGGTGTGCGCCCACCTGCACGGCCAGGAACTGCTGGCGGAACAGCCGGAACCGCCGCCCCCGGC
GCCGGACGCCTACCCGGACCTGCGCGACGTCAAAGGCCAGGCCCAGGCCAAGCGGGCCCTGGAGATCGCCGCCGCCGGCG
GCCATTCGCTCCTTTTCAGCGGCCCGCCCGGCACCGGCAAGTCCATGCTGGCGGCGCGCCTGCCCGGCCTGCTGCCGCCC
ATGAGCGAGGCGGAAGCCCTGGAATCGGCCGCCATCCTCTCCCTGGGGCGCCAGTTCCGCCCCGAGGCCTTCTCCCGCCG
CGTCATGCGCAGCCCCCACCACACCTCCTCGGCCATCGCCCTGGTCGGCGGCGGGGCCCAGCCCCGGCCCGGGGAGATTT
CCCTGGCCCACCACGGCGTGCTATTCCTCGACGAACTGCCCGAGTTCGACCGCCGGGTCCTGGAGGCCCTGCGCGAACCC
CTGGAAAGCGGCCACATCCATGTTTCCCGGGCCGCTTCCCGGGCCGATTTTCCTGCCCGCTTCCAGCTGGTGGCCGCCAT
GAATCCCTGTCCCTGCGGCTATCGGGGCCATCCCCGGCGGCTCTGCCGCTGCACCCCGGACCAGGTGGCCCGCTACCGGG
GGCGCCTCTCCGGCCCCCTGCTGGACCGCATCGATCTGCTGCTGGAAGTGCCCGACCTGGGCGCCGAGGAACTGCAGGCC
GCCCCGGACGGGGAAAGTTCGGCCCAGGTGCGGCAGCGGGTGGTCCTGGCCCGGGAGCGGCAGTTGCAGCGCCAGGGCGT
CTGCAACGCCCGGCTCGAGGGCAGCGAACTGGAGTACCATTGCCGGCCGGACGCCGACGGGGCCGCCCTGCTGCAACAGG
CGGTGCGCCGCCTCGACCTGTCGCCCCGGGCCTACCACCGGGTCCTGCGGGTGGCCCGCAGCATCGCCGACCTGGCCGCA
GCGCCGCAGATCGGCGCCGCCCAGGTGGCCGAAGCCCTGCATTACCGCCGCAACGAAACTCCCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.515

99.402

0.572
  comM Vibrio campbellii strain DS40M4

56.313

99.402

0.56
  comM Haemophilus influenzae Rd KW20

53.968

100

0.542
  comM Glaesserella parasuis strain SC1401

51.786

100

0.52
  comM Legionella pneumophila str. Paris

49.008

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.008

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.442

Multiple sequence alignment