Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL2XO_RS02755 Genome accession   NZ_CP178738
Coordinates   609508..611031 (-) Length   507 a.a.
NCBI ID   WP_413742130.1    Uniprot ID   -
Organism   Sodalis sp. RH15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604508..616031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XO_RS02730 (ACL2XO_02730) ytfR 604539..606041 (+) 1503 WP_413743022.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  ACL2XO_RS02735 (ACL2XO_02735) ytfT 606055..607071 (+) 1017 WP_413726337.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACL2XO_RS02740 (ACL2XO_02740) yjfF 607064..608092 (+) 1029 WP_132923849.1 galactofuranose ABC transporter, permease protein YjfF -
  ACL2XO_RS02745 (ACL2XO_02745) hdfR 608203..609021 (-) 819 WP_203524399.1 HTH-type transcriptional regulator HdfR -
  ACL2XO_RS02750 (ACL2XO_02750) - 609143..609481 (+) 339 WP_132923847.1 DUF413 domain-containing protein -
  ACL2XO_RS02755 (ACL2XO_02755) comM 609508..611031 (-) 1524 WP_413742130.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL2XO_RS02760 (ACL2XO_02760) ilvL 611390..611488 (+) 99 WP_132923845.1 ilv operon leader peptide -
  ACL2XO_RS02765 (ACL2XO_02765) ilvG 611648..613294 (+) 1647 WP_413726339.1 acetolactate synthase 2 catalytic subunit -
  ACL2XO_RS02770 (ACL2XO_02770) ilvM 613291..613548 (+) 258 WP_132923843.1 acetolactate synthase 2 small subunit -
  ACL2XO_RS02775 (ACL2XO_02775) - 613570..614499 (+) 930 WP_132923842.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55352.47 Da        Isoelectric Point: 7.6023

>NTDB_id=1091248 ACL2XO_RS02755 WP_413742130.1 609508..611031(-) (comM) [Sodalis sp. RH15]
MSLAFVYTRASIGIQAPLITVEAHISKGLPGFTLVGLPDATVKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIALAILAASKQITPEELAGFEFLGELALSGEIRPVQGAIPAALEASRAERQLILSNHNGAEAGLVPHSRVLTAERL
QEVCRFIQGAGELASVAHHADPPDEYKGTDLRDVIGQQQAKRALEIAAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLDD
NEAIETAAIASLINVDNARRHWRRRPFRAPHHSATLAALVGGGAIPRPGEVSLAHNGVLFLDELPEFQRRVLDALREPLE
AGEINISRAQTKVLYPARFQLIGAMNPSPSGDYQGIHSRSGPQQTLRYLNRLSGPFLDRFDMSIEVPLLPPGMLRQPGTN
GEESATVRERVRIAREMQLDRCQKINAHMNNQEVGVYCRLDEAEAIFLENVMEKLGLSARAWHRTLKVARTLADLAGVPE
IRRCHLAEAVSYRSIDRLLQQLWQQME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1091248 ACL2XO_RS02755 WP_413742130.1 609508..611031(-) (comM) [Sodalis sp. RH15]
ATGTCACTGGCATTCGTCTATACCCGGGCTTCAATCGGCATCCAGGCGCCCTTGATAACAGTGGAGGCCCACATCAGCAA
AGGATTGCCCGGATTTACCCTGGTGGGGCTACCCGACGCCACCGTCAAGGGCGCTCGGGATCGGGTACGCAGCGCATTAT
TGAATAATGGCTTCGATTTTCCCGCCCGGCGCATTACCGTCAGTCTGGCGCCGGCGGATCTGCCCAAAGAGGGCGGACGT
TATGATTTGCCTATTGCCTTGGCCATCCTGGCGGCGTCAAAGCAGATCACTCCTGAGGAGCTGGCCGGGTTTGAATTTCT
CGGTGAACTGGCGCTGTCCGGTGAAATACGGCCGGTGCAAGGGGCAATCCCCGCCGCGCTGGAAGCGTCACGGGCAGAGC
GGCAACTTATACTGTCGAACCACAACGGCGCCGAAGCCGGGCTGGTGCCCCATAGTCGTGTTCTGACAGCCGAACGGCTG
CAGGAGGTCTGCCGGTTTATACAGGGCGCGGGAGAACTGGCCTCGGTGGCACACCACGCCGACCCGCCGGACGAGTATAA
AGGGACCGATTTGCGGGATGTTATCGGCCAGCAGCAGGCCAAGCGAGCGCTGGAAATCGCCGCCGCCGGCGGCCATAACC
TGTTGCTGATGGGGCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCAGGCTGCCCGGGTTGTTGCCGCCCCTGGACGAT
AACGAGGCCATCGAAACCGCCGCCATCGCCAGTCTGATAAATGTCGATAATGCCCGCCGGCACTGGCGCCGACGTCCCTT
CCGCGCGCCCCATCACAGCGCCACCTTGGCGGCATTGGTGGGAGGCGGCGCCATACCGCGACCCGGTGAAGTTTCCCTGG
CCCATAACGGGGTACTGTTCCTTGATGAACTGCCGGAATTTCAGCGGCGGGTACTGGATGCGTTGCGCGAGCCGCTGGAG
GCAGGCGAAATCAATATCTCCCGCGCCCAGACCAAGGTTCTCTATCCGGCGCGCTTTCAGTTGATCGGCGCGATGAATCC
CAGCCCCTCCGGCGATTACCAAGGCATCCACAGCCGCAGCGGCCCGCAGCAGACCTTGCGTTATCTGAACCGTTTATCCG
GTCCGTTCCTCGATCGTTTCGATATGTCCATTGAAGTGCCACTGTTGCCTCCCGGCATGCTGCGTCAGCCGGGTACGAAC
GGCGAAGAGAGCGCTACGGTACGGGAACGTGTGCGGATAGCCCGGGAGATGCAGCTGGACCGCTGTCAGAAAATCAATGC
GCATATGAATAATCAGGAGGTAGGAGTTTATTGTCGACTGGACGAAGCTGAAGCGATTTTTTTGGAAAATGTCATGGAAA
AGCTTGGCCTTTCCGCCCGGGCCTGGCACCGAACGCTGAAGGTCGCACGTACTCTGGCTGATTTGGCCGGTGTGCCGGAG
ATACGGCGTTGCCATTTGGCGGAAGCCGTCAGCTACCGCAGCATCGACCGCTTACTGCAACAACTTTGGCAACAAATGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.584

99.606

0.613
  comM Haemophilus influenzae Rd KW20

60.672

99.803

0.606
  comM Glaesserella parasuis strain SC1401

60.158

100

0.602
  comM Vibrio campbellii strain DS40M4

59.406

99.606

0.592
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.93

100

0.467

Multiple sequence alignment