Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL2XJ_RS09455 Genome accession   NZ_CP178737
Coordinates   2081737..2083260 (-) Length   507 a.a.
NCBI ID   WP_413726338.1    Uniprot ID   -
Organism   Sodalis sp. RH16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2076737..2088260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XJ_RS09430 (ACL2XJ_09430) ytfR 2076768..2078270 (+) 1503 WP_413726876.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  ACL2XJ_RS09435 (ACL2XJ_09435) ytfT 2078284..2079300 (+) 1017 WP_413726337.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACL2XJ_RS09440 (ACL2XJ_09440) yjfF 2079293..2080321 (+) 1029 WP_132923849.1 galactofuranose ABC transporter, permease protein YjfF -
  ACL2XJ_RS09445 (ACL2XJ_09445) hdfR 2080432..2081250 (-) 819 WP_203524399.1 HTH-type transcriptional regulator HdfR -
  ACL2XJ_RS09450 (ACL2XJ_09450) - 2081372..2081710 (+) 339 WP_132923847.1 DUF413 domain-containing protein -
  ACL2XJ_RS09455 (ACL2XJ_09455) comM 2081737..2083260 (-) 1524 WP_413726338.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL2XJ_RS09460 (ACL2XJ_09460) ilvL 2083619..2083717 (+) 99 WP_132923845.1 ilv operon leader peptide -
  ACL2XJ_RS09465 (ACL2XJ_09465) ilvG 2083877..2085523 (+) 1647 WP_413726339.1 acetolactate synthase 2 catalytic subunit -
  ACL2XJ_RS09470 (ACL2XJ_09470) ilvM 2085520..2085777 (+) 258 WP_132923843.1 acetolactate synthase 2 small subunit -
  ACL2XJ_RS09475 (ACL2XJ_09475) - 2085799..2086728 (+) 930 WP_132923842.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55378.51 Da        Isoelectric Point: 7.3634

>NTDB_id=1091234 ACL2XJ_RS09455 WP_413726338.1 2081737..2083260(-) (comM) [Sodalis sp. RH16]
MSLAFVYTRASIGIQAPLITVEAHISKGLPGFTLVGLPDATVKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIALAILAASKQIPPEELAGFEFLGELALSGEIRPVQGAIPAALEASRAERQLILSNHNGAEAGLVPHSRVLTAERL
QEVCRFIQGAGELASVAHHADPPDEYKGTDLRDVIGQQQAKRALEIAAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLDD
NEAIETAAIASLINVDNARWHWRRRPFRAPHHSATLAALVGGGAIPRPGEVSLAHNGVLFLDELPEFQRRVLDALREPLE
AGEINISRAQTKVLYPARFQLIGAMNPSPSGDYQGIHSRSGPQQTLRYLNRLSGPFLDRFDMSIEVPLLPPGMLRQPGTN
GEESATVRERVRIAREMQLDRCQKINAHMNNQEVGVYCRLDEAEAIFLENVMEKLGLSARAWHRTLKVARTLADLAGVPE
IRRCHLAEAVSYRSIDRLLQQLWQQME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1091234 ACL2XJ_RS09455 WP_413726338.1 2081737..2083260(-) (comM) [Sodalis sp. RH16]
ATGTCACTGGCATTCGTCTATACCCGGGCTTCAATCGGCATCCAGGCGCCCTTGATAACAGTGGAGGCCCACATCAGCAA
AGGATTGCCCGGATTTACCCTGGTGGGGCTACCCGACGCCACCGTCAAGGGCGCTCGGGATCGGGTACGCAGCGCATTAT
TGAATAATGGCTTCGATTTTCCCGCCCGGCGCATTACCGTCAGTCTGGCGCCGGCGGATCTGCCCAAAGAGGGCGGACGT
TATGATTTGCCTATTGCCTTGGCCATCCTGGCGGCGTCAAAGCAGATCCCTCCTGAGGAGCTGGCCGGGTTTGAATTTCT
CGGTGAACTGGCGCTGTCCGGTGAAATACGGCCGGTGCAAGGGGCAATCCCCGCCGCGCTGGAAGCGTCACGGGCAGAGC
GGCAACTTATACTGTCGAACCACAACGGCGCCGAAGCCGGGCTGGTGCCCCATAGTCGTGTTCTGACAGCCGAACGGCTG
CAGGAGGTCTGCCGGTTTATACAGGGCGCGGGAGAACTGGCCTCGGTGGCACACCACGCCGACCCGCCGGACGAGTATAA
AGGGACCGATTTACGGGATGTTATCGGCCAGCAGCAGGCCAAGCGAGCGCTGGAAATCGCCGCCGCCGGCGGCCATAACC
TGTTGCTGATGGGGCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCAGGCTGCCCGGGTTGTTGCCGCCCCTGGACGAT
AACGAGGCCATCGAAACCGCCGCCATCGCCAGTCTGATAAATGTCGATAATGCCCGCTGGCACTGGCGCCGACGTCCCTT
CCGCGCGCCCCATCACAGCGCCACCTTGGCGGCATTGGTGGGAGGCGGCGCCATACCGCGACCCGGTGAAGTTTCCCTGG
CCCATAACGGGGTACTGTTCCTTGATGAACTGCCGGAATTTCAGCGGCGGGTACTGGATGCGTTGCGCGAGCCGCTGGAG
GCAGGCGAAATCAATATCTCCCGCGCCCAGACCAAGGTTCTCTATCCGGCGCGCTTTCAGTTGATCGGCGCGATGAATCC
CAGCCCCTCCGGCGATTACCAAGGCATCCACAGCCGCAGCGGCCCGCAGCAGACCTTGCGTTATCTGAACCGTTTATCCG
GTCCGTTCCTCGATCGTTTCGATATGTCCATTGAAGTGCCGCTGTTGCCTCCCGGCATGCTGCGTCAGCCGGGTACGAAC
GGCGAAGAGAGCGCTACGGTACGGGAACGTGTGCGGATAGCCCGGGAGATGCAGCTGGACCGCTGTCAGAAAATCAATGC
GCATATGAATAATCAGGAGGTAGGAGTTTATTGTCGCCTGGACGAAGCTGAAGCGATTTTTTTGGAAAATGTCATGGAAA
AGCTTGGCCTTTCCGCCCGGGCCTGGCACCGAACGCTGAAGGTAGCCCGTACTCTGGCTGATTTGGCCGGTGTGCCGGAG
ATACGGCGTTGCCATTTGGCGGAAGCCGTCAGCTACCGCAGCATCGACCGCTTACTGCAACAACTTTGGCAACAAATGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.584

99.606

0.613
  comM Haemophilus influenzae Rd KW20

60.672

99.803

0.606
  comM Glaesserella parasuis strain SC1401

60.158

100

0.602
  comM Vibrio campbellii strain DS40M4

59.406

99.606

0.592
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.93

100

0.467

Multiple sequence alignment