Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XJ_RS06165 Genome accession   NZ_CP178737
Coordinates   1350957..1351526 (-) Length   189 a.a.
NCBI ID   WP_413725992.1    Uniprot ID   -
Organism   Sodalis sp. RH16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1345957..1356526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XJ_RS06140 (ACL2XJ_06140) fhuF 1345999..1346727 (+) 729 WP_413725987.1 siderophore-iron reductase FhuF -
  ACL2XJ_RS06145 (ACL2XJ_06145) - 1346820..1347578 (-) 759 WP_413725988.1 SDR family NAD(P)-dependent oxidoreductase -
  ACL2XJ_RS06150 (ACL2XJ_06150) - 1347712..1348626 (+) 915 WP_413725989.1 LysR family transcriptional regulator -
  ACL2XJ_RS06155 (ACL2XJ_06155) - 1348817..1349611 (-) 795 WP_413725990.1 alpha/beta fold hydrolase -
  ACL2XJ_RS06160 (ACL2XJ_06160) - 1349727..1350635 (+) 909 WP_413725991.1 LysR family transcriptional regulator -
  ACL2XJ_RS06165 (ACL2XJ_06165) ssb 1350957..1351526 (-) 570 WP_413725992.1 single-stranded DNA-binding protein Machinery gene
  ACL2XJ_RS06170 (ACL2XJ_06170) uvrA 1351771..1354626 (+) 2856 WP_132924585.1 excinuclease ABC subunit UvrA -
  ACL2XJ_RS06175 (ACL2XJ_06175) - 1354806..1355462 (-) 657 WP_413726856.1 TenA family protein -
  ACL2XJ_RS06180 (ACL2XJ_06180) - 1355462..1356304 (-) 843 WP_413725993.1 BtpA/SgcQ family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19698.74 Da        Isoelectric Point: 5.2456

>NTDB_id=1091229 ACL2XJ_RS06165 WP_413725992.1 1350957..1351526(-) (ssb) [Sodalis sp. RH16]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAGAPGANAGGGQQGGWGQPQQPQGNNAQFSGNPAAAPSST
AGRPAAAPQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1091229 ACL2XJ_RS06165 WP_413725992.1 1350957..1351526(-) (ssb) [Sodalis sp. RH16]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTATATGCCGAACGG
TGGCGCGGTAGCCAACATGACTCTGGCCACTTCCGAAAGCTGGCGCGACAAGCAGACCGGCGAAACCAAGGAAAAGACCG
AATGGCACCGGGTGGTCCTGTTCGGCAAACTCGCTGAAGTGGCGGGGGAATACCTGAAAAAAGGTTCCCAGGTCTATATT
GAAGGGGCGCTGCAAACCCGCAAATGGACCGATCAAGGCGGCCAGGAACGTTACACCACCGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCGGGCGCGCCCGGTGCCAATGCCGGCGGCGGACAGCAGG
GCGGCTGGGGCCAGCCGCAGCAGCCGCAGGGCAATAACGCGCAGTTCAGCGGTAATCCCGCTGCCGCGCCGTCGTCGACC
GCCGGTCGTCCGGCCGCTGCGCCGCAGAACAATGCGCCGGCTGCCGGCAATGAACCGCCGATGGATTTTGACGACGATAT
TCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.016

100

0.677
  ssb Glaesserella parasuis strain SC1401

55.08

98.942

0.545
  ssb Neisseria meningitidis MC58

49.189

97.884

0.481
  ssb Neisseria gonorrhoeae MS11

49.189

97.884

0.481
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.702

99.471

0.365

Multiple sequence alignment