Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL2XF_RS22145 Genome accession   NZ_CP178734
Coordinates   4918939..4920462 (-) Length   507 a.a.
NCBI ID   WP_413727539.1    Uniprot ID   -
Organism   Sodalis sp. RH19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4913939..4925462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XF_RS22120 (ACL2XF_22120) ytfR 4914015..4915517 (+) 1503 WP_410016698.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  ACL2XF_RS22125 (ACL2XF_22125) ytfT 4915532..4916548 (+) 1017 WP_413721636.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACL2XF_RS22130 (ACL2XF_22130) yjfF 4916541..4917602 (+) 1062 WP_410013110.1 galactofuranose ABC transporter, permease protein YjfF -
  ACL2XF_RS22135 (ACL2XF_22135) hdfR 4917635..4918453 (-) 819 WP_413727538.1 HTH-type transcriptional regulator HdfR -
  ACL2XF_RS22140 (ACL2XF_22140) - 4918574..4918912 (+) 339 WP_410013112.1 DUF413 domain-containing protein -
  ACL2XF_RS22145 (ACL2XF_22145) comM 4918939..4920462 (-) 1524 WP_413727539.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL2XF_RS22150 (ACL2XF_22150) ilvL 4920845..4920946 (+) 102 WP_162367070.1 ilv operon leader peptide -
  ACL2XF_RS22155 (ACL2XF_22155) ilvG 4921103..4922749 (+) 1647 WP_410013114.1 acetolactate synthase 2 catalytic subunit -
  ACL2XF_RS22160 (ACL2XF_22160) ilvM 4922746..4923003 (+) 258 WP_410013115.1 acetolactate synthase 2 small subunit -
  ACL2XF_RS22165 (ACL2XF_22165) ilvE 4923025..4923954 (+) 930 WP_410013116.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54447.61 Da        Isoelectric Point: 8.6583

>NTDB_id=1091178 ACL2XF_RS22145 WP_413727539.1 4918939..4920462(-) (comM) [Sodalis sp. RH19]
MSLALIYTRASIGVQAPLISVEAHISKGLPGFTLVGLPDATIKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIALAILAASEQIAADKLACHEFLGELALSGELRPVQGAIPAALAAQQAGRRLILSSHNSGEAALIPDSRVLVAGHL
RDVCAFLQGGAELNAVPGQDPTPPAYDGADLSDITGQPQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLPGLMPPLSD
AEAVETAALISLMSAGAARRHWRQRPFRAPHHSASMAALVGGGSLPRPGEISLAHNGVLFLDELPEFQRRVLDALREPLE
AGEIVISRAQAKVQYPARFQLVGAMNPSPSGDYQGVHGRSGLAQTLRYLNRLSGPFLDRFDLSIEVPLLPPGMLRRQNPA
GETSAMVRARVQAAREIQLRRGRKINAYLNNQEVALYCRLAEEDAVFLEEVMETLGLSVRAWHRTLKVARTLADLAGAAE
IQRDHLAEAVSYRTIDRLLQQLWRHME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1091178 ACL2XF_RS22145 WP_413727539.1 4918939..4920462(-) (comM) [Sodalis sp. RH19]
ATGTCGCTTGCGTTAATTTATACCCGGGCGTCGATCGGCGTCCAGGCGCCGTTGATTTCAGTGGAGGCCCATATCAGCAA
AGGTCTGCCCGGCTTTACCCTGGTGGGGTTGCCTGACGCGACGATAAAAGGGGCGCGCGATCGGGTACGCAGCGCGCTGC
TGAACAACGGTTTCGATTTTCCCGCCCGGCGGATAACCGTCAGCCTGGCGCCGGCCGATCTGCCCAAGGAAGGCGGGCGC
TATGATTTGCCTATTGCGCTGGCGATCCTGGCCGCGTCGGAACAAATTGCCGCCGATAAGCTCGCTTGCCATGAATTTCT
CGGCGAACTGGCGCTGTCCGGCGAACTGCGGCCGGTGCAGGGCGCCATTCCGGCGGCGCTGGCGGCACAACAGGCCGGGC
GGCGTCTGATCCTGTCCAGCCATAACAGCGGCGAGGCGGCCCTGATACCGGATAGCCGCGTGCTGGTCGCCGGGCATCTG
CGCGATGTATGCGCCTTCCTGCAGGGCGGCGCCGAACTCAATGCCGTGCCAGGCCAGGACCCGACGCCGCCGGCATACGA
CGGCGCCGATCTCAGCGACATCACCGGCCAGCCGCAGGCCAAACGCGCCCTGGAAATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTTATCGGTCCGCCAGGCACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGGTTGATGCCCCCCTTAAGCGAT
GCGGAGGCCGTAGAGACCGCCGCGCTGATCAGTCTGATGAGCGCCGGGGCCGCCCGCCGGCATTGGCGCCAAAGACCGTT
TCGCGCCCCGCATCACAGCGCCTCGATGGCGGCCCTGGTCGGCGGCGGTTCCCTACCCCGGCCCGGCGAGATATCCCTGG
CCCATAACGGGGTGTTATTCCTGGATGAGCTGCCGGAGTTCCAGCGCCGGGTGCTGGACGCGCTGCGCGAACCGCTGGAA
GCGGGTGAAATCGTTATCTCCCGCGCCCAGGCCAAGGTACAATACCCGGCGCGTTTCCAACTGGTGGGCGCCATGAACCC
CAGTCCGTCCGGCGATTACCAGGGCGTCCACGGCCGCAGCGGCCTCGCGCAGACCCTGCGTTACCTGAACCGGTTATCCG
GCCCCTTCCTGGATCGTTTTGACCTGTCCATCGAGGTGCCGCTGCTGCCGCCGGGAATGCTGCGCCGGCAGAACCCGGCG
GGCGAGACCAGCGCGATGGTGCGCGCCAGGGTGCAAGCGGCGCGCGAAATCCAGCTGCGGCGCGGCCGGAAAATCAATGC
GTATCTCAATAACCAGGAAGTTGCATTATATTGCCGGCTTGCTGAAGAGGACGCGGTTTTCCTGGAAGAGGTGATGGAAA
CGCTGGGTTTGTCGGTACGCGCCTGGCACCGGACGCTCAAGGTTGCCCGAACGCTGGCGGATTTGGCGGGCGCGGCCGAA
ATACAGCGCGATCATCTGGCGGAGGCCGTCAGCTATCGCACCATTGATCGTCTGCTGCAACAGCTTTGGCGGCACATGGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.055

99.803

0.619
  comM Vibrio cholerae strain A1552

61.952

99.014

0.613
  comM Glaesserella parasuis strain SC1401

61.341

100

0.613
  comM Vibrio campbellii strain DS40M4

60.956

99.014

0.604
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.825

100

0.465

Multiple sequence alignment