Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL2XM_RS23185 Genome accession   NZ_CP178733
Coordinates   5094654..5096177 (-) Length   507 a.a.
NCBI ID   WP_413721635.1    Uniprot ID   -
Organism   Sodalis sp. RH20     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5089654..5101177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XM_RS23160 (ACL2XM_23160) ytfR 5089730..5091232 (+) 1503 WP_410016698.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  ACL2XM_RS23165 (ACL2XM_23165) ytfT 5091247..5092263 (+) 1017 WP_410013109.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACL2XM_RS23170 (ACL2XM_23170) yjfF 5092256..5093233 (+) 978 Protein_4539 galactofuranose ABC transporter, permease protein YjfF -
  ACL2XM_RS23175 (ACL2XM_23175) hdfR 5093350..5094168 (-) 819 WP_410013111.1 HTH-type transcriptional regulator HdfR -
  ACL2XM_RS23180 (ACL2XM_23180) - 5094289..5094627 (+) 339 WP_410013112.1 DUF413 domain-containing protein -
  ACL2XM_RS23185 (ACL2XM_23185) comM 5094654..5096177 (-) 1524 WP_413721635.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL2XM_RS23190 (ACL2XM_23190) ilvL 5096560..5096661 (+) 102 WP_162367070.1 ilv operon leader peptide -
  ACL2XM_RS23195 (ACL2XM_23195) ilvG 5096818..5098464 (+) 1647 WP_410013114.1 acetolactate synthase 2 catalytic subunit -
  ACL2XM_RS23200 (ACL2XM_23200) ilvM 5098461..5098718 (+) 258 WP_410013115.1 acetolactate synthase 2 small subunit -
  ACL2XM_RS23205 (ACL2XM_23205) ilvE 5098740..5099669 (+) 930 WP_410013116.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54433.58 Da        Isoelectric Point: 8.6583

>NTDB_id=1091157 ACL2XM_RS23185 WP_413721635.1 5094654..5096177(-) (comM) [Sodalis sp. RH20]
MSLALIYTRASIGVQAPLISVEAHISKGLPGFTLVGLPDATIKGARDRVRSALLNNGFDFPARRITVSLAPADLPKEGGR
YDLPIALAILAASEQIAADKLACHEFLGELALSGELRPVQGAIPAALAAQQAGRRLILSSHNSGEAALIPDSRVLVAGHL
RDVCAFLQGGAELNAVPGQDPTPPAYDGADLSDITGQPQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLPGLMPPLSD
AEAVETAALISLMSAGAARRHWRQRPFRAPHHSASMAALVGGGSLPRPGEISLAHNGVLFLDELPEFQRRVLDALREPLE
AGEIVISRAQAKVQYPARFQLVGAMNPSPSGDYQGVHGRSGLAQTLRYLNRLSGPFLDRFDLSIEVPLLPPGMLRRQNPA
GETSAMVRARVQAARDIQLRRGRKINAYLNNQEVALYCRLAEEDAVFLEEVMETLGLSVRAWHRTLKVARTLADLAGAAE
IQRDHLAEAVSYRTIDRLLQQLWRHME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1091157 ACL2XM_RS23185 WP_413721635.1 5094654..5096177(-) (comM) [Sodalis sp. RH20]
ATGTCCCTTGCGTTAATTTATACCCGGGCGTCGATCGGCGTCCAGGCGCCGTTGATTTCAGTGGAGGCCCATATCAGCAA
AGGTCTGCCCGGCTTTACCCTGGTGGGGTTGCCTGACGCGACGATAAAAGGGGCGCGCGATCGGGTACGCAGCGCGCTGC
TGAACAACGGTTTCGATTTTCCCGCCCGGCGGATAACCGTCAGCCTGGCGCCGGCCGATCTGCCCAAGGAAGGCGGGCGC
TATGATTTGCCTATTGCGCTGGCGATCCTGGCCGCGTCGGAACAAATTGCCGCCGATAAGCTCGCTTGCCATGAATTTCT
CGGCGAACTGGCGCTGTCCGGCGAACTGCGGCCGGTGCAGGGCGCCATTCCGGCGGCGCTGGCGGCACAACAGGCCGGGC
GGCGTCTGATCCTGTCCAGCCATAACAGCGGCGAGGCGGCCCTGATACCGGATAGCCGCGTGCTGGTCGCCGGGCATCTG
CGCGATGTATGCGCCTTCCTGCAGGGCGGCGCCGAACTCAATGCCGTGCCGGGCCAGGACCCGACGCCGCCGGCATACGA
CGGCGCCGATCTCAGCGACATCACCGGCCAGCCGCAGGCCAAACGCGCCCTGGAAATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTTATCGGTCCGCCGGGCACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGGTTGATGCCCCCCTTAAGCGAT
GCGGAGGCCGTAGAGACCGCCGCGCTGATCAGTCTGATGAGCGCCGGGGCCGCCCGCCGGCATTGGCGCCAAAGACCGTT
TCGCGCCCCGCATCACAGCGCCTCGATGGCGGCCCTGGTCGGCGGCGGTTCCCTACCCCGGCCCGGCGAGATATCCCTGG
CCCATAACGGGGTGTTATTCCTAGATGAGCTGCCGGAGTTCCAGCGCCGGGTGCTGGACGCGCTGCGCGAACCGCTGGAA
GCGGGTGAAATCGTTATCTCCCGCGCCCAGGCCAAGGTACAATACCCGGCGCGTTTCCAACTGGTGGGCGCCATGAACCC
CAGTCCGTCCGGCGATTACCAGGGCGTCCACGGCCGCAGCGGCCTCGCGCAGACCCTGCGTTACCTGAACCGGTTATCCG
GCCCCTTCCTGGATCGTTTTGACCTGTCCATCGAGGTGCCGCTGCTGCCGCCGGGAATGCTGCGCCGGCAGAACCCGGCG
GGCGAGACCAGCGCGATGGTGCGCGCCAGGGTGCAAGCGGCGCGCGACATCCAGCTGCGGCGCGGCCGGAAAATCAATGC
GTATCTCAATAACCAGGAAGTTGCATTATATTGCCGGCTTGCTGAAGAGGACGCGGTTTTCCTGGAAGAGGTGATGGAAA
CGCTGGGTTTGTCGGTACGCGCCTGGCACCGGACGCTCAAGGTTGCCCGAACGCTGGCGGATTTGGCGGGCGCGGCCGAA
ATACAGCGCGATCATCTGGCGGAGGCCGTCAGCTATCGCACCATTGATCGTCTGCTGCAACAGCTTTGGCGGCACATGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.858

99.803

0.617
  comM Glaesserella parasuis strain SC1401

61.341

100

0.613
  comM Vibrio cholerae strain A1552

61.753

99.014

0.611
  comM Vibrio campbellii strain DS40M4

61.155

99.014

0.606
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.631

100

0.464

Multiple sequence alignment