Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACLZ8E_RS03515 | Genome accession | NZ_CP178726 |
| Coordinates | 778571..779038 (+) | Length | 155 a.a. |
| NCBI ID | WP_064600181.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain 13.4-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 766711..805989 | 778571..779038 | within | 0 |
Gene organization within MGE regions
Location: 766711..805989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLZ8E_RS03415 (ACLZ8E_03415) | - | 766711..767760 (-) | 1050 | WP_002504795.1 | tyrosine-type recombinase/integrase | - |
| ACLZ8E_RS03420 (ACLZ8E_03420) | - | 767871..768068 (+) | 198 | WP_002497576.1 | hypothetical protein | - |
| ACLZ8E_RS03425 (ACLZ8E_03425) | - | 768065..768472 (-) | 408 | WP_002497577.1 | TIR domain-containing protein | - |
| ACLZ8E_RS03430 (ACLZ8E_03430) | - | 768466..768903 (-) | 438 | WP_002497578.1 | DUF4231 domain-containing protein | - |
| ACLZ8E_RS03435 (ACLZ8E_03435) | - | 769015..769683 (-) | 669 | WP_002497579.1 | hypothetical protein | - |
| ACLZ8E_RS03440 (ACLZ8E_03440) | - | 769892..771031 (-) | 1140 | WP_080472846.1 | CapA family protein | - |
| ACLZ8E_RS03445 (ACLZ8E_03445) | - | 771077..771541 (-) | 465 | WP_049367112.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACLZ8E_RS03450 (ACLZ8E_03450) | - | 771556..771888 (-) | 333 | WP_049367114.1 | helix-turn-helix domain-containing protein | - |
| ACLZ8E_RS03455 (ACLZ8E_03455) | - | 772064..772309 (+) | 246 | WP_049367116.1 | helix-turn-helix domain-containing protein | - |
| ACLZ8E_RS03460 (ACLZ8E_03460) | - | 772339..773085 (+) | 747 | WP_049367118.1 | phage antirepressor KilAC domain-containing protein | - |
| ACLZ8E_RS03465 (ACLZ8E_03465) | - | 773127..773360 (+) | 234 | WP_002499262.1 | MW1434 family type I TA system toxin | - |
| ACLZ8E_RS03470 (ACLZ8E_03470) | - | 773346..773684 (-) | 339 | WP_002499261.1 | hypothetical protein | - |
| ACLZ8E_RS03475 (ACLZ8E_03475) | - | 773742..773951 (+) | 210 | WP_049367120.1 | hypothetical protein | - |
| ACLZ8E_RS03480 (ACLZ8E_03480) | - | 773967..774113 (+) | 147 | WP_002502039.1 | hypothetical protein | - |
| ACLZ8E_RS03485 (ACLZ8E_03485) | - | 774110..774391 (-) | 282 | WP_002502040.1 | hypothetical protein | - |
| ACLZ8E_RS03490 (ACLZ8E_03490) | - | 774481..774672 (+) | 192 | WP_002502041.1 | DUF1270 family protein | - |
| ACLZ8E_RS03495 (ACLZ8E_03495) | - | 774732..774995 (+) | 264 | WP_002502042.1 | hypothetical protein | - |
| ACLZ8E_RS03500 (ACLZ8E_03500) | - | 774998..776947 (+) | 1950 | WP_064600172.1 | AAA family ATPase | - |
| ACLZ8E_RS03505 (ACLZ8E_03505) | - | 776949..777872 (+) | 924 | WP_064600175.1 | recombinase RecT | - |
| ACLZ8E_RS03510 (ACLZ8E_03510) | - | 777941..778570 (+) | 630 | WP_264080663.1 | MBL fold metallo-hydrolase | - |
| ACLZ8E_RS03515 (ACLZ8E_03515) | ssbA | 778571..779038 (+) | 468 | WP_064600181.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLZ8E_RS03520 (ACLZ8E_03520) | - | 779061..780026 (+) | 966 | WP_064600183.1 | DnaD domain-containing protein | - |
| ACLZ8E_RS03525 (ACLZ8E_03525) | - | 780045..780260 (+) | 216 | WP_064600186.1 | DUF3269 family protein | - |
| ACLZ8E_RS03530 (ACLZ8E_03530) | - | 780315..780821 (+) | 507 | WP_064600190.1 | dUTPase | - |
| ACLZ8E_RS03535 (ACLZ8E_03535) | - | 780787..780942 (+) | 156 | WP_154803512.1 | hypothetical protein | - |
| ACLZ8E_RS03540 (ACLZ8E_03540) | - | 780993..781295 (-) | 303 | WP_064600193.1 | DUF4870 domain-containing protein | - |
| ACLZ8E_RS03545 (ACLZ8E_03545) | rinB | 781400..781576 (+) | 177 | WP_002499244.1 | transcriptional activator RinB | - |
| ACLZ8E_RS03550 (ACLZ8E_03550) | - | 781584..781733 (+) | 150 | WP_151507108.1 | DUF1514 domain-containing protein | - |
| ACLZ8E_RS03555 (ACLZ8E_03555) | - | 781750..782196 (+) | 447 | WP_064600198.1 | transcriptional regulator | - |
| ACLZ8E_RS03560 (ACLZ8E_03560) | - | 782780..783130 (+) | 351 | WP_017464444.1 | HNH endonuclease | - |
| ACLZ8E_RS03565 (ACLZ8E_03565) | - | 783290..783775 (+) | 486 | WP_002502056.1 | phage terminase small subunit P27 family | - |
| ACLZ8E_RS03570 (ACLZ8E_03570) | - | 783768..785519 (+) | 1752 | WP_049404235.1 | terminase large subunit | - |
| ACLZ8E_RS03575 (ACLZ8E_03575) | - | 785535..785729 (+) | 195 | WP_002502058.1 | hypothetical protein | - |
| ACLZ8E_RS03580 (ACLZ8E_03580) | - | 785729..786961 (+) | 1233 | WP_002502059.1 | phage portal protein | - |
| ACLZ8E_RS03585 (ACLZ8E_03585) | - | 786951..787508 (+) | 558 | WP_064600201.1 | HK97 family phage prohead protease | - |
| ACLZ8E_RS03590 (ACLZ8E_03590) | - | 787550..788887 (+) | 1338 | WP_064600204.1 | phage major capsid protein | - |
| ACLZ8E_RS03595 (ACLZ8E_03595) | - | 788906..789247 (+) | 342 | WP_002502061.1 | head-tail connector protein | - |
| ACLZ8E_RS03600 (ACLZ8E_03600) | - | 789237..789566 (+) | 330 | WP_064600206.1 | hypothetical protein | - |
| ACLZ8E_RS03605 (ACLZ8E_03605) | - | 789563..789967 (+) | 405 | WP_064600210.1 | hypothetical protein | - |
| ACLZ8E_RS03610 (ACLZ8E_03610) | - | 789972..790376 (+) | 405 | WP_064600212.1 | hypothetical protein | - |
| ACLZ8E_RS03615 (ACLZ8E_03615) | - | 790389..791015 (+) | 627 | WP_064600215.1 | major tail protein | - |
| ACLZ8E_RS03620 (ACLZ8E_03620) | - | 791034..791219 (+) | 186 | WP_049367138.1 | hypothetical protein | - |
| ACLZ8E_RS03625 (ACLZ8E_03625) | gpG | 791283..791645 (+) | 363 | WP_002502067.1 | phage tail assembly chaperone G | - |
| ACLZ8E_RS03630 (ACLZ8E_03630) | gpGT | 791678..791830 (+) | 153 | WP_002502068.1 | phage tail assembly chaperone GT | - |
| ACLZ8E_RS03635 (ACLZ8E_03635) | - | 791859..796415 (+) | 4557 | WP_064600218.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACLZ8E_RS03640 (ACLZ8E_03640) | - | 796417..797250 (+) | 834 | WP_049367142.1 | phage tail domain-containing protein | - |
| ACLZ8E_RS03645 (ACLZ8E_03645) | - | 797260..798819 (+) | 1560 | WP_002502071.1 | prophage endopeptidase tail family protein | - |
| ACLZ8E_RS03650 (ACLZ8E_03650) | - | 798812..798985 (+) | 174 | WP_002502072.1 | hypothetical protein | - |
| ACLZ8E_RS03655 (ACLZ8E_03655) | - | 799001..800863 (+) | 1863 | WP_002502073.1 | M14 family metallopeptidase | - |
| ACLZ8E_RS03660 (ACLZ8E_03660) | - | 800863..802077 (+) | 1215 | WP_002502074.1 | BppU family phage baseplate upper protein | - |
| ACLZ8E_RS03665 (ACLZ8E_03665) | - | 802082..802705 (+) | 624 | WP_032606043.1 | poly-gamma-glutamate hydrolase family protein | - |
| ACLZ8E_RS03670 (ACLZ8E_03670) | - | 802702..803127 (+) | 426 | WP_002502076.1 | hypothetical protein | - |
| ACLZ8E_RS03675 (ACLZ8E_03675) | - | 803114..803521 (+) | 408 | WP_002502077.1 | hypothetical protein | - |
| ACLZ8E_RS03680 (ACLZ8E_03680) | - | 803679..804077 (+) | 399 | WP_032606342.1 | YxeA family protein | - |
| ACLZ8E_RS03685 (ACLZ8E_03685) | - | 804141..804551 (+) | 411 | WP_002497618.1 | phage holin | - |
| ACLZ8E_RS03690 (ACLZ8E_03690) | - | 804526..805989 (+) | 1464 | WP_064600221.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 17360.13 Da Isoelectric Point: 7.0155
>NTDB_id=1091012 ACLZ8E_RS03515 WP_064600181.1 778571..779038(+) (ssbA) [Staphylococcus epidermidis strain 13.4-1]
MINRVVLVGRLTKDPEFRTTQSGIDVATFTLAVNRNFTNAQGEREADFINIIVFRKQAHNVNNYLSKGKLAGVDGRIQSR
SYENQEGRRVFVTEVVADSVQFLEPKNTQQGGQQDAYQQQTQSQTQRGQNTKPQGQNPFANANGPIDISDDDLPF
MINRVVLVGRLTKDPEFRTTQSGIDVATFTLAVNRNFTNAQGEREADFINIIVFRKQAHNVNNYLSKGKLAGVDGRIQSR
SYENQEGRRVFVTEVVADSVQFLEPKNTQQGGQQDAYQQQTQSQTQRGQNTKPQGQNPFANANGPIDISDDDLPF
Nucleotide
Download Length: 468 bp
>NTDB_id=1091012 ACLZ8E_RS03515 WP_064600181.1 778571..779038(+) (ssbA) [Staphylococcus epidermidis strain 13.4-1]
ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAACAACTCAAAGTGGAATTGATGTTGC
AACTTTCACACTAGCAGTTAATCGTAATTTCACAAACGCACAGGGCGAACGTGAAGCAGATTTTATCAATATTATCGTAT
TTAGAAAACAAGCACACAATGTTAACAACTACTTATCGAAAGGAAAATTAGCAGGCGTTGATGGTCGAATTCAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGAGTATTTGTAACTGAAGTAGTTGCAGATAGCGTTCAATTTCTTGAACCTAAAAA
CACACAACAAGGTGGTCAACAAGACGCTTACCAGCAACAAACTCAATCACAAACACAACGTGGCCAAAATACTAAACCAC
AAGGACAAAATCCTTTCGCAAATGCTAATGGACCGATTGATATCAGTGATGATGATTTACCATTTTAA
ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAACAACTCAAAGTGGAATTGATGTTGC
AACTTTCACACTAGCAGTTAATCGTAATTTCACAAACGCACAGGGCGAACGTGAAGCAGATTTTATCAATATTATCGTAT
TTAGAAAACAAGCACACAATGTTAACAACTACTTATCGAAAGGAAAATTAGCAGGCGTTGATGGTCGAATTCAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGAGTATTTGTAACTGAAGTAGTTGCAGATAGCGTTCAATTTCTTGAACCTAAAAA
CACACAACAAGGTGGTCAACAAGACGCTTACCAGCAACAAACTCAATCACAAACACAACGTGGCCAAAATACTAAACCAC
AAGGACAAAATCCTTTCGCAAATGCTAATGGACCGATTGATATCAGTGATGATGATTTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.658 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.574 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
68.387 |
0.413 |
| ssb | Glaesserella parasuis strain SC1401 |
32.402 |
100 |
0.374 |
| ssb | Vibrio cholerae strain A1552 |
31.111 |
100 |
0.361 |