Detailed information NTG1090930

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACL6EO_RS12165
• Genome accession: NZ_CP178718
• Coordinates: 2511702..2512139 (-)
• Length: 145 a.a.
• NCBI ID: WP_095061019.1
• Uniprot ID: A0AAP4DGY0
• Organism: Bacillus velezensis strain SY1154
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2506702..2517139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL6EO_RS12115 (ACL6EO_12115)	sinI	2507085..2507258 (+)	174	WP_014418369.1	anti-repressor SinI	Regulator
ACL6EO_RS12120 (ACL6EO_12120)	sinR	2507292..2507627 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
ACL6EO_RS12125 (ACL6EO_12125)	tasA	2507675..2508460 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
ACL6EO_RS12130 (ACL6EO_12130)	sipW	2508525..2509109 (-)	585	WP_012117977.1	signal peptidase I SipW	-
ACL6EO_RS12135 (ACL6EO_12135)	tapA	2509081..2509752 (-)	672	WP_014418371.1	amyloid fiber anchoring/assembly protein TapA	-
ACL6EO_RS12140 (ACL6EO_12140)	-	2510011..2510340 (+)	330	WP_012117979.1	DUF3889 domain-containing protein	-
ACL6EO_RS12145 (ACL6EO_12145)	-	2510381..2510560 (-)	180	WP_003153093.1	YqzE family protein	-
ACL6EO_RS12150 (ACL6EO_12150)	comGG	2510617..2510994 (-)	378	WP_276350926.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACL6EO_RS12155 (ACL6EO_12155)	comGF	2510995..2511390 (-)	396	WP_025649850.1	competence type IV pilus minor pilin ComGF	-
ACL6EO_RS12160 (ACL6EO_12160)	comGE	2511404..2511718 (-)	315	WP_017418140.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACL6EO_RS12165 (ACL6EO_12165)	comGD	2511702..2512139 (-)	438	WP_095061019.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACL6EO_RS12170 (ACL6EO_12170)	comGC	2512129..2512437 (-)	309	WP_014418376.1	competence type IV pilus major pilin ComGC	Machinery gene
ACL6EO_RS12175 (ACL6EO_12175)	comGB	2512442..2513479 (-)	1038	WP_053284924.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACL6EO_RS12180 (ACL6EO_12180)	comGA	2513466..2514536 (-)	1071	WP_413383808.1	competence type IV pilus ATPase ComGA	Machinery gene
ACL6EO_RS12185 (ACL6EO_12185)	-	2514729..2515679 (-)	951	WP_014418379.1	magnesium transporter CorA family protein	-
ACL6EO_RS12190 (ACL6EO_12190)	-	2515825..2517126 (+)	1302	WP_029973873.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16282.81 Da
• Isoelectric Point: 10.1850

>NTDB_id=1090930 ACL6EO_RS12165 WP_095061019.1 2511702..2512139(-) (comGD) [Bacillus velezensis strain SY1154]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLVVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1090930 ACL6EO_RS12165 WP_095061019.1 2511702..2512139(-) (comGD) [Bacillus velezensis strain SY1154]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGTCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACGCTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	54.795	100	0.552