Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACL6EO_RS12120 Genome accession   NZ_CP178718
Coordinates   2507292..2507627 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SY1154     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2502292..2512627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EO_RS12100 (ACL6EO_12100) gcvT 2502898..2503998 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  ACL6EO_RS12105 (ACL6EO_12105) - 2504422..2506092 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  ACL6EO_RS12110 (ACL6EO_12110) - 2506114..2506908 (+) 795 WP_014418368.1 YqhG family protein -
  ACL6EO_RS12115 (ACL6EO_12115) sinI 2507085..2507258 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  ACL6EO_RS12120 (ACL6EO_12120) sinR 2507292..2507627 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACL6EO_RS12125 (ACL6EO_12125) tasA 2507675..2508460 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACL6EO_RS12130 (ACL6EO_12130) sipW 2508525..2509109 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACL6EO_RS12135 (ACL6EO_12135) tapA 2509081..2509752 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6EO_RS12140 (ACL6EO_12140) - 2510011..2510340 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACL6EO_RS12145 (ACL6EO_12145) - 2510381..2510560 (-) 180 WP_003153093.1 YqzE family protein -
  ACL6EO_RS12150 (ACL6EO_12150) comGG 2510617..2510994 (-) 378 WP_276350926.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACL6EO_RS12155 (ACL6EO_12155) comGF 2510995..2511390 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  ACL6EO_RS12160 (ACL6EO_12160) comGE 2511404..2511718 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACL6EO_RS12165 (ACL6EO_12165) comGD 2511702..2512139 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACL6EO_RS12170 (ACL6EO_12170) comGC 2512129..2512437 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1090927 ACL6EO_RS12120 WP_003153104.1 2507292..2507627(+) (sinR) [Bacillus velezensis strain SY1154]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1090927 ACL6EO_RS12120 WP_003153104.1 2507292..2507627(+) (sinR) [Bacillus velezensis strain SY1154]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment