Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLKML_RS12060 Genome accession   NZ_CP178628
Coordinates   966346..967869 (+) Length   507 a.a.
NCBI ID   WP_413285522.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 961346..972869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS12045 (ACLKML_12045) - 963038..963991 (-) 954 WP_413285520.1 branched-chain amino acid transaminase -
  ACLKML_RS12050 (ACLKML_12050) ilvM 964006..964275 (-) 270 WP_317718146.1 acetolactate synthase 2 small subunit -
  ACLKML_RS12055 (ACLKML_12055) ilvG 964275..965921 (-) 1647 WP_413285521.1 acetolactate synthase 2 catalytic subunit -
  ACLKML_RS12060 (ACLKML_12060) comM 966346..967869 (+) 1524 WP_413285522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLKML_RS12065 (ACLKML_12065) - 967918..968922 (-) 1005 WP_413285523.1 serine/threonine protein kinase -
  ACLKML_RS12070 (ACLKML_12070) ccoG 969010..970428 (-) 1419 WP_317718150.1 cytochrome c oxidase accessory protein CcoG -
  ACLKML_RS12075 (ACLKML_12075) - 970627..970893 (-) 267 WP_413285524.1 YihD family protein -
  ACLKML_RS12080 (ACLKML_12080) - 971007..971153 (-) 147 WP_413285525.1 hypothetical protein -
  ACLKML_RS12085 (ACLKML_12085) - 971449..972252 (+) 804 WP_413285526.1 sporulation protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55338.68 Da        Isoelectric Point: 7.4828

>NTDB_id=1090689 ACLKML_RS12060 WP_413285522.1 966346..967869(+) (comM) [Vibrio sp. MA40-2]
MVLAVIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSNFEYPSKKITVNLAPADLPKEGGR
FDLPIALGVLAAAELIEVDKLENYEFIGELALSGDLRAVKGVLPAALAALKARRCLVVPDENGDQAALVGENVHKSASSL
LEVCSALCGQKSLLLNQLETPNPSKKSQQDLQDIIGQKQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEALQTASVASLTEQEINKFNWKKRPFRAPHHSASMAALVGGGSTPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAAGKTKFPARFQLIGALNPSPSGYYDSDTSRVNPQVVLRYLSRLSGPLLDRFDMSLEIPLLPKGTLAEGGDR
GESTEVVKGRVQQARQRMLMRSGKINALLSNRDIEKYCVLTKQDAEFLENALHRLGLSIRAYHRIIKVARTIADLDEQEL
IERKNLAEALGYRYMDRLLKQLNHQVV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1090689 ACLKML_RS12060 WP_413285522.1 966346..967869(+) (comM) [Vibrio sp. MA40-2]
ATGGTTTTAGCTGTCATTCATAGTCGTGCAAGCGTTGGAGTTGAAGCGCCGTCGGTTACGGTTGAGGTTCATATCAGTAA
TGGTATGCCGGGCTTTACCTTGGTTGGTTTACCTGAGACTACGGTGAAAGAATCGAGAGATAGAGTAAGAAGTGCCATTA
TTAACTCAAATTTTGAATACCCCAGCAAAAAAATAACAGTAAATCTTGCGCCAGCTGATTTACCTAAAGAGGGAGGACGG
TTTGATTTACCCATTGCGTTAGGTGTTTTAGCTGCGGCAGAACTAATAGAGGTGGATAAGCTTGAAAATTATGAATTTAT
TGGTGAATTAGCACTCTCTGGTGACTTGAGAGCGGTAAAAGGTGTACTGCCTGCGGCCTTAGCCGCCCTAAAAGCACGTC
GTTGTTTGGTTGTTCCTGATGAAAATGGAGATCAGGCGGCACTGGTAGGAGAAAACGTACATAAATCGGCTTCAAGTTTG
TTAGAAGTCTGCTCTGCTCTATGTGGTCAAAAAAGTTTACTATTAAATCAACTAGAAACCCCTAATCCTAGTAAGAAATC
CCAGCAAGATTTACAAGATATTATAGGACAGAAGCAAGGAAAGCGTGCATTAGAAATCGCGGCTGCTGGAGGGCATAATC
TGTTATTTCTTGGGCCTCCTGGAACTGGAAAAACTATGCTAGCTTCAAGATTGTGTGATTTACTGCCAGAAATGAGTGAT
GATGAGGCACTTCAAACCGCTTCTGTCGCTTCATTGACTGAACAAGAAATTAATAAATTCAATTGGAAGAAAAGACCTTT
TCGTGCGCCTCATCATTCTGCTTCTATGGCGGCTTTGGTTGGTGGTGGGTCTACTCCTCGTCCGGGAGAAATATCGCTTG
CTCATAATGGATTACTCTTTCTTGATGAAATGCCAGAATTTGAGAGAAAAGTACTCGATTCAATGAGAGAGCCACTTGAA
TCCGGAGAGATTATTATTTCAAGAGCAGCAGGAAAAACAAAATTCCCCGCCAGGTTTCAATTGATAGGAGCATTAAATCC
AAGTCCCTCTGGTTACTACGATAGCGATACATCCAGAGTGAACCCACAAGTGGTTTTACGGTATTTAAGTCGGCTATCAG
GGCCGCTTTTAGATCGGTTTGATATGTCTTTAGAGATCCCATTGTTACCTAAAGGAACGCTTGCAGAAGGTGGTGATAGA
GGTGAAAGTACTGAGGTGGTTAAAGGTCGTGTTCAACAAGCCAGACAGAGAATGTTAATGCGTTCGGGAAAAATAAATGC
GCTTTTAAGTAATAGAGATATTGAGAAATACTGTGTATTGACCAAACAAGATGCAGAATTTTTGGAGAATGCGTTACACC
GATTAGGTTTATCTATTCGTGCATATCACCGAATCATAAAAGTGGCTCGTACTATTGCAGATTTAGATGAGCAGGAACTA
ATAGAGCGGAAAAATTTAGCAGAAGCATTAGGCTATCGTTATATGGATAGGTTACTCAAACAGTTAAACCATCAAGTGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.331

100

0.795
  comM Vibrio campbellii strain DS40M4

79.487

100

0.795
  comM Glaesserella parasuis strain SC1401

63.241

99.803

0.631
  comM Haemophilus influenzae Rd KW20

61.811

100

0.619
  comM Legionella pneumophila str. Paris

48.297

98.422

0.475
  comM Legionella pneumophila strain ERS1305867

48.297

98.422

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.604

100

0.426

Multiple sequence alignment