Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJQW4_RS04225 Genome accession   NZ_CP178606
Coordinates   900639..902123 (+) Length   494 a.a.
NCBI ID   WP_241628260.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 895639..907123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS04200 (ACJQW4_04200) ribD 896572..897657 (-) 1086 WP_241628263.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACJQW4_RS04205 (ACJQW4_04205) nrdR 897666..898127 (-) 462 WP_116762406.1 transcriptional regulator NrdR -
  ACJQW4_RS04210 (ACJQW4_04210) - 898268..899668 (-) 1401 WP_241628262.1 ammonium transporter -
  ACJQW4_RS04215 (ACJQW4_04215) glnK 899727..900065 (-) 339 WP_016168502.1 P-II family nitrogen regulator -
  ACJQW4_RS04220 (ACJQW4_04220) - 900345..900572 (+) 228 WP_241628261.1 accessory factor UbiK family protein -
  ACJQW4_RS04225 (ACJQW4_04225) comM 900639..902123 (+) 1485 WP_241628260.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJQW4_RS04230 (ACJQW4_04230) - 902161..902907 (-) 747 WP_241628258.1 TorF family putative porin -
  ACJQW4_RS04235 (ACJQW4_04235) - 904041..905312 (+) 1272 WP_241628257.1 OprD family outer membrane porin -
  ACJQW4_RS04240 (ACJQW4_04240) ppa 905415..905939 (-) 525 WP_241628255.1 inorganic diphosphatase -
  ACJQW4_RS04245 (ACJQW4_04245) - 906051..906449 (-) 399 WP_241628253.1 MAPEG family protein -
  ACJQW4_RS04250 (ACJQW4_04250) - 906557..906943 (+) 387 WP_241628252.1 hypothetical protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54458.26 Da        Isoelectric Point: 7.8028

>NTDB_id=1090395 ACJQW4_RS04225 WP_241628260.1 900639..902123(+) (comM) [Acinetobacter sp. A7.4]
MSFAKINTRGLLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEHSVDQLEFIGELALDGQLRPTTGTLSIAIACQQAQHRLILPEQNALEAAQLPHFEVYAAKHL
KDVCEHLSQTHPLPAVKVEADSHRQAYKFDLADVKGQLRPRRGLEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLDT
QENLEVASIYSVANTQHRFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITYPANFQLIAAMNPCPCGYAFNQDQRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLTVQELQAQSAAE
SSTQVRERVIQAYEQQIQRQNCLNHALSPQQLEQYAYLNAQTKHMLELAQQRLNLSARAYHRVLRVARTIADLANATEIQ
TTHLSEALSYRQPQ

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1090395 ACJQW4_RS04225 WP_241628260.1 900639..902123(+) (comM) [Acinetobacter sp. A7.4]
ATGTCTTTTGCTAAAATAAATACGCGAGGGCTATTGGGTCTGCACGCCCCGCTCATTGAAGTTGAAGTCCACTTAAGTCA
AGGATTACCATCACTTACTATTGTTGGATTAGCCGAAGCGGCTGTTCGAGAAAGTAAAGATCGGGTCAGATCTGCCATTA
TTAATAGTGGTTTTCAGTTCCCCAGTAAGCGACTGACCATTAATCTTGCACCCGCAGATTTGCCCAAAGATGGTTCACGC
CTAGATTTACCTATTGCATTGGGCATTTTAATTGCTTCTGGGCAATTACCAGAACATTCAGTCGATCAGCTTGAATTTAT
TGGAGAATTGGCTTTAGACGGTCAATTACGTCCAACCACAGGTACCTTGAGTATTGCCATTGCCTGTCAGCAAGCACAGC
ATCGTTTAATTTTGCCCGAACAAAATGCATTGGAGGCAGCACAACTGCCCCATTTTGAGGTGTATGCTGCAAAACATCTC
AAAGACGTCTGCGAACATTTAAGCCAGACTCATCCCTTGCCGGCCGTGAAAGTTGAGGCTGACTCACATAGACAGGCTTA
TAAATTTGATTTGGCAGATGTCAAAGGACAATTGCGTCCTCGACGTGGATTAGAAATTGCTGCGGCTGGCGGACATTCCT
TGCTTTTTCGTGGTCCACCAGGCACAGGAAAAACCTTATTGGCATCACGCTTACCCAGCATTCTGCCGCCTTTAGATACG
CAAGAGAATTTAGAAGTTGCGAGTATTTATTCAGTTGCCAATACTCAGCATCGTTTTGGGCAACGTCCGTTTCGTGCACC
GCATCATACCGCTTCTGCCATTGCACTGGTGGGTGGTGGTTCGCAGCCCAAACCTGGTGAAATCACCTTGGCCCATTTAG
GGGTACTATTTTTAGATGAATTGCCAGAGTTTGATCGCAAAGTTTTAGAAGTATTAAGACAACCTCTAGAATCCAAAGAA
ATTGTCATTTCTCGGGCATCTCGGCAAATTACCTATCCTGCAAACTTCCAGCTCATTGCAGCCATGAATCCTTGCCCATG
TGGTTATGCTTTTAATCAGGACCAGCGTTGCCAATGTTCAGCGGAATCAATTAAACGCTACCAAAACCGAATTTCAGGCC
CCCTTCTTGATCGCATTGATTTGCATATCGATGTCCCACCACTGACAGTGCAAGAATTACAGGCACAAAGTGCAGCAGAA
AGTTCAACACAAGTTCGGGAACGGGTCATTCAAGCCTATGAGCAACAGATACAACGCCAGAATTGTCTCAATCATGCGTT
GAGTCCTCAACAACTTGAACAATATGCCTATTTAAATGCGCAAACCAAACACATGTTGGAACTTGCACAGCAACGTTTGA
ATTTATCCGCCCGCGCTTATCATCGGGTATTAAGAGTGGCAAGAACGATTGCTGATTTGGCAAATGCGACAGAAATTCAA
ACAACTCATTTAAGTGAAGCCTTATCATATAGACAGCCCCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.516
  comM Vibrio cholerae strain A1552

49.899

100

0.5
  comM Glaesserella parasuis strain SC1401

49.499

100

0.5
  comM Legionella pneumophila str. Paris

49.095

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.095

100

0.494
  comM Vibrio campbellii strain DS40M4

49.293

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.47

Multiple sequence alignment