Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL2DY_RS19105 Genome accession   NZ_CP178544
Coordinates   4138480..4139994 (+) Length   504 a.a.
NCBI ID   WP_011898225.1    Uniprot ID   A4SHE5
Organism   Aeromonas salmonicida strain JK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4133480..4144994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2DY_RS19090 (ACL2DY_19090) - 4135208..4136149 (-) 942 WP_059111903.1 branched-chain amino acid transaminase -
  ACL2DY_RS19095 (ACL2DY_19095) ilvM 4136162..4136452 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  ACL2DY_RS19100 (ACL2DY_19100) ilvG 4136449..4138095 (-) 1647 WP_413163122.1 acetolactate synthase 2 catalytic subunit -
  ACL2DY_RS19105 (ACL2DY_19105) comM 4138480..4139994 (+) 1515 WP_011898225.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL2DY_RS19110 (ACL2DY_19110) - 4140131..4141030 (+) 900 WP_413163126.1 acyltransferase -
  ACL2DY_RS19115 (ACL2DY_19115) - 4141189..4141686 (-) 498 WP_413163128.1 DUF523 domain-containing protein -
  ACL2DY_RS19120 (ACL2DY_19120) - 4141683..4142333 (-) 651 WP_011898224.1 NUDIX hydrolase -
  ACL2DY_RS19125 (ACL2DY_19125) - 4142408..4143043 (+) 636 WP_169047058.1 nicotinamidase -
  ACL2DY_RS19130 (ACL2DY_19130) pncB 4143145..4144323 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54679.59 Da        Isoelectric Point: 7.4493

>NTDB_id=1090074 ACL2DY_RS19105 WP_011898225.1 4138480..4139994(+) (comM) [Aeromonas salmonicida strain JK]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1090074 ACL2DY_RS19105 WP_011898225.1 4138480..4139994(+) (comM) [Aeromonas salmonicida strain JK]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCTTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCACTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGACCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATTGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGGCCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTAGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTTGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGGATGCTGAGCCGCAATGGCAAGCTCAACAATCT
CCTTGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4SHE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466

Multiple sequence alignment