Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACAM23_RS10040 Genome accession   NZ_AP031394
Coordinates   1915760..1916173 (-) Length   137 a.a.
NCBI ID   WP_000265630.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1910760..1921173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM23_RS10010 (SPNE16P28_19420) - 1911462..1912286 (-) 825 WP_369608070.1 membrane protein insertase YidC -
  ACAM23_RS10015 (SPNE16P28_19430) rnpA 1912261..1912632 (-) 372 WP_000739246.1 ribonuclease P protein component -
  ACAM23_RS10020 - 1912649..1912780 (-) 132 WP_000768903.1 hypothetical protein -
  ACAM23_RS10025 (SPNE16P28_19440) - 1912781..1913971 (-) 1191 WP_000167759.1 acetate kinase -
  ACAM23_RS10030 (SPNE16P28_19450) comYH 1914022..1914975 (-) 954 WP_000345123.1 class I SAM-dependent methyltransferase Machinery gene
  ACAM23_RS10035 (SPNE16P28_19460) - 1915036..1915623 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  ACAM23_RS10040 (SPNE16P28_19470) comGG/cglG 1915760..1916173 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACAM23_RS10045 (SPNE16P28_19480) comGF/cglF 1916151..1916612 (-) 462 WP_000250548.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACAM23_RS10050 (SPNE16P28_19490) comGE/cglE 1916575..1916877 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACAM23_RS10055 (SPNE16P28_19500) comGD/cglD 1916840..1917244 (-) 405 WP_000588007.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACAM23_RS10060 (SPNE16P28_19510) comGC/cglC 1917237..1917563 (-) 327 WP_000738624.1 competence type IV pilus major pilin ComGC Machinery gene
  ACAM23_RS10065 (SPNE16P28_19520) comGB/cglB 1917565..1918581 (-) 1017 WP_073177425.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACAM23_RS10070 (SPNE16P28_19530) comGA/cglA/cilD 1918529..1919470 (-) 942 WP_000249559.1 competence type IV pilus ATPase ComGA Machinery gene
  ACAM23_RS10075 (SPNE16P28_19540) - 1919546..1919911 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.29 Da        Isoelectric Point: 10.1695

>NTDB_id=108997 ACAM23_RS10040 WP_000265630.1 1915760..1916173(-) (comGG/cglG) [Streptococcus pneumoniae strain 16P28]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=108997 ACAM23_RS10040 WP_000265630.1 1915760..1916173(-) (comGG/cglG) [Streptococcus pneumoniae strain 16P28]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869

  comGG/cglG Streptococcus pneumoniae Rx1

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae D39

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae R6

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

85.401

0.818

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

89.051

0.81

  comYG Streptococcus mutans UA140

40.299

97.81

0.394

  comYG Streptococcus mutans UA159

40.299

97.81

0.394


Multiple sequence alignment