Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL4H5_RS10210 Genome accession   NZ_CP178517
Coordinates   613868..614398 (+) Length   176 a.a.
NCBI ID   WP_168577430.1    Uniprot ID   -
Organism   Tritonibacter mobilis strain AipH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 608868..619398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL4H5_RS10190 (ACL4H5_10190) - 609666..611081 (-) 1416 WP_413221270.1 tetratricopeptide repeat-containing sulfotransferase family protein -
  ACL4H5_RS10195 (ACL4H5_10195) - 611210..612346 (-) 1137 WP_413221272.1 cytochrome-c peroxidase -
  ACL4H5_RS10200 (ACL4H5_10200) - 612485..612859 (-) 375 WP_413221273.1 hypothetical protein -
  ACL4H5_RS10205 (ACL4H5_10205) - 613023..613598 (-) 576 WP_005617923.1 lytic transglycosylase domain-containing protein -
  ACL4H5_RS10210 (ACL4H5_10210) ssb 613868..614398 (+) 531 WP_168577430.1 single-stranded DNA-binding protein Machinery gene
  ACL4H5_RS10215 (ACL4H5_10215) - 614512..616929 (-) 2418 WP_413221274.1 GcvT family protein -
  ACL4H5_RS10220 (ACL4H5_10220) - 617177..618490 (-) 1314 WP_005638837.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18203.82 Da        Isoelectric Point: 5.2795

>NTDB_id=1089848 ACL4H5_RS10210 WP_168577430.1 613868..614398(+) (ssb) [Tritonibacter mobilis strain AipH2]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQFLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGFGGGQGGGDYGGGGGGYGGGGSYGGGGGGGNQGGGF
GGGGPSQNIDDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1089848 ACL4H5_RS10210 WP_168577430.1 613868..614398(+) (ssb) [Tritonibacter mobilis strain AipH2]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATCGGCAACCTTGGCCGCGATCCGGAAGTGCGTAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTACGGATCGCGACGTCGGAGACGTGGAAGGACCGCAACACCGGTGAGCGCCGTGAAAAAACCGAAT
GGCACTCTGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTCGCAGAGCAATTTTTGCGCAAAGGGTCCAAGGTCTATATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGGTATTCTACCGAAGTCGTGCTGCAAGGCTT
TGGCTCGACGCTCACCATGCTTGATGGTCGCGGCGAAGGTGGCGGCGGCGGCTTTGGCGGTGGTCAAGGCGGCGGCGATT
ACGGTGGCGGCGGTGGCGGCTACGGTGGTGGTGGCAGCTACGGCGGCGGCGGTGGCGGCGGCAACCAAGGCGGTGGCTTT
GGTGGCGGTGGCCCCTCGCAAAACATTGACGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.273

100

0.523
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.511
  ssb Neisseria meningitidis MC58

40.556

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.415

Multiple sequence alignment