Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACLLO5_RS14840 Genome accession   NZ_CP178454
Coordinates   3354979..3355344 (-) Length   121 a.a.
NCBI ID   WP_013193093.1    Uniprot ID   A0A926WHW0
Organism   Anabaena azotica SJ-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3349979..3360344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLLO5_RS14830 (ACLLO5_14830) - 3351341..3354421 (-) 3081 WP_413171281.1 methyl-accepting chemotaxis protein -
  ACLLO5_RS14835 (ACLLO5_14835) - 3354438..3354965 (-) 528 WP_413171282.1 chemotaxis protein CheW -
  ACLLO5_RS14840 (ACLLO5_14840) pilH 3354979..3355344 (-) 366 WP_013193093.1 response regulator transcription factor Machinery gene
  ACLLO5_RS14845 (ACLLO5_14845) - 3355542..3356747 (-) 1206 WP_413171283.1 response regulator -
  ACLLO5_RS14850 (ACLLO5_14850) hmpF 3357398..3359158 (+) 1761 WP_413171284.1 pilus motility taxis protein HmpF -
  ACLLO5_RS14855 (ACLLO5_14855) tilS 3359191..3360165 (-) 975 WP_413171285.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13310.42 Da        Isoelectric Point: 4.8604

>NTDB_id=1089672 ACLLO5_RS14840 WP_013193093.1 3354979..3355344(-) (pilH) [Anabaena azotica SJ-1]
MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1089672 ACLLO5_RS14840 WP_013193093.1 3354979..3355344(-) (pilH) [Anabaena azotica SJ-1]
ATGAGTACAGTTCTGATTGTTGAAGACAGTATCGCCCAAAGGGAGATGATTACAGACCTCCTGAAAGCTAGTGGCCTAAC
TGTTACCCATGCGGGGGATGGAGTAGAAGCTTTAGAAGCAATTCAAAGCACACCTCCCGATTTAGTAGTTTTAGATATTG
TCATGCCCCGGATGAACGGCTACGAACTTTGTCGGCGTTTAAAGTCCGATCCCAAGACCCAAAATGTCCCTGTCGTCATG
TGTTCATCCAAAGGTGAAGAATTTGATCGCTATTGGGGTATGAAACAGGGAGCCGACGCTTACATAGCCAAACCGTTTCA
ACCAACTGAATTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372

Multiple sequence alignment