Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLTDJ_RS00975 Genome accession   NZ_CP178394
Coordinates   203316..204809 (-) Length   497 a.a.
NCBI ID   WP_413052287.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 198316..209809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS00960 (ACLTDJ_00960) - 199124..200791 (+) 1668 WP_094999737.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACLTDJ_RS00965 (ACLTDJ_00965) - 200837..202234 (-) 1398 WP_138738390.1 NorM family multidrug efflux MATE transporter -
  ACLTDJ_RS00970 (ACLTDJ_00970) - 202387..203306 (+) 920 Protein_193 LysR substrate-binding domain-containing protein -
  ACLTDJ_RS00975 (ACLTDJ_00975) comM 203316..204809 (-) 1494 WP_413052287.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLTDJ_RS00980 (ACLTDJ_00980) - 204985..205263 (+) 279 WP_130872179.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACLTDJ_RS00985 (ACLTDJ_00985) - 205271..205576 (+) 306 WP_094999741.1 HigA family addiction module antitoxin -
  ACLTDJ_RS00990 (ACLTDJ_00990) - 205578..206006 (-) 429 WP_095017856.1 bleomycin resistance protein -
  ACLTDJ_RS00995 (ACLTDJ_00995) - 206053..206313 (-) 261 WP_094999743.1 accessory factor UbiK family protein -
  ACLTDJ_RS01000 (ACLTDJ_01000) glnK 206730..207068 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACLTDJ_RS01005 (ACLTDJ_01005) - 207102..208439 (+) 1338 WP_094999744.1 ammonium transporter -
  ACLTDJ_RS01010 (ACLTDJ_01010) sutA 208922..209248 (+) 327 WP_094999745.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53062.38 Da        Isoelectric Point: 7.9891

>NTDB_id=1089443 ACLTDJ_RS00975 WP_413052287.1 203316..204809(-) (comM) [Pseudomonas bubulae strain S31]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQLPAVALEQVECLGELALSGAIRPVQGILPAALAARAAGRALVVPQANAEEACLACGLTVIAAEHL
LQLVAHFAGREVIEPYIPSGLLHISKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASQVPLNCWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNPPLAS
GDTTANAAGLVAAARERQLQRQGCANAFLDLPGVRTQCRLSDMDNSWLEAACERMTLSLRAAHRLLKVARTLADLEQAHN
IERKHLAEALQYRPFSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1089443 ACLTDJ_RS00975 WP_413052287.1 203316..204809(-) (comM) [Pseudomonas bubulae strain S31]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCCGTTACGGTCGAGGCGCATCTGGCCAA
TGGGTTGCCTGCGTTGACGCTGGTTGGTTTGCCCGAAACAGCGGTCAAGGAAAGTAAAGACCGGGTACGCAGCGCAATCA
TCAACTCCACCCTGGATTTCCCGGCCCGGCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATGTGGCCATTGCCCTGGGCATTTTGGCGGCCAGCGGGCAACTGCCGGCTGTGGCGCTGGAGCAGGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGCGCAATCAGGCCAGTGCAGGGCATATTGCCTGCCGCCCTGGCAGCAAGGGCCGCAGGCC
GGGCGCTGGTGGTACCGCAGGCCAATGCCGAAGAAGCCTGCCTGGCCTGCGGGCTGACAGTAATTGCGGCCGAGCACTTG
TTGCAGTTGGTGGCCCATTTCGCAGGTCGGGAGGTGATAGAGCCCTATATCCCCAGCGGCTTGCTGCATATCAGCAAACC
CTATCCCGACCTGAGCGATGTCCAAGGGCAGCTTTCGGCCAAACGGGCATTGCTGGTCGCTGCTGCTGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCGGGCACGGGTAAAACCTTGCTGGCTAGCCGCCTGCCCGGCTTGTTGCCACCGCTCAATGAA
CAAGAGGCGCTGGAAGTGGCCGCCATTCAGTCAGTGGCCAGCCAAGTGCCATTGAACTGCTGGCCACAGCGACCGTTTCG
CCAACCTCATCATTCGGCCTCGGGGCCGGCGCTGGTGGGCGGCGGCTCCAAACCGCGGCCCGGGGAAATAACCCTGGCCC
ATCACGGCGTATTGTTTCTGGATGAGCTTCCCGAGTTTGATCGCAAGGTTCTGGAAGTCTTGCGAGAGCCCATGGAAAGC
GGCTTTATCGTGATTGCACGGGCGAAAGATCGCATGCGTTTTCCGGCGCGCTTCCAACTGGTTGCGGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAACCCACTGGCCGCTGCCGCTGTACACCGGAGCAAATCCAGCGCTATCGCAACAAACTTT
CCGGCCCGTTGCTCGATCGCATCGACCTGCACCTGACCGTAGCCCGCGAGACCACCACTCTCAACCCGCCGCTTGCCTCA
GGTGACACCACGGCCAACGCCGCCGGGCTTGTGGCTGCGGCGCGTGAGCGCCAACTGCAACGTCAGGGCTGCGCCAATGC
CTTTCTCGATCTGCCGGGCGTGCGAACCCAATGCCGCTTGAGCGATATGGATAACAGCTGGCTGGAGGCGGCTTGCGAGC
GCATGACCTTGTCACTGCGAGCGGCACACCGACTGCTGAAAGTGGCAAGGACCCTGGCGGACCTGGAGCAGGCACACAAT
ATAGAGCGCAAGCATCTCGCAGAGGCGTTGCAATATCGGCCATTCAGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

54

100

0.543
  comM Glaesserella parasuis strain SC1401

53.493

100

0.539
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

100

0.449

Multiple sequence alignment