Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL0K2_RS11305 Genome accession   NZ_CP178378
Coordinates   2480837..2482336 (+) Length   499 a.a.
NCBI ID   WP_045160419.1    Uniprot ID   A0A0D9ASY4
Organism   Pseudomonas sp. YJ42     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2475837..2487336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL0K2_RS11275 (ACL0K2_11275) sutA 2476069..2476398 (-) 330 WP_045160425.1 transcriptional regulator SutA -
  ACL0K2_RS11280 (ACL0K2_11280) - 2476473..2476898 (-) 426 WP_239610158.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACL0K2_RS11285 (ACL0K2_11285) - 2476994..2478247 (-) 1254 WP_045160422.1 ammonium transporter -
  ACL0K2_RS11290 (ACL0K2_11290) - 2478329..2479645 (-) 1317 WP_045160420.1 ammonium transporter -
  ACL0K2_RS11295 (ACL0K2_11295) glnK 2479810..2480148 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  ACL0K2_RS11300 (ACL0K2_11300) - 2480540..2480803 (+) 264 WP_045160570.1 accessory factor UbiK family protein -
  ACL0K2_RS11305 (ACL0K2_11305) comM 2480837..2482336 (+) 1500 WP_045160419.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACL0K2_RS11310 (ACL0K2_11310) - 2482527..2484494 (+) 1968 WP_413042667.1 BCCT family transporter -
  ACL0K2_RS11315 (ACL0K2_11315) - 2484531..2486168 (-) 1638 WP_413044463.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52996.92 Da        Isoelectric Point: 7.9027

>NTDB_id=1089239 ACL0K2_RS11305 WP_045160419.1 2480837..2482336(+) (comM) [Pseudomonas sp. YJ42]
MSLAIVHSRAQVGVEAPSVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSDFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQIPPDRLDSLECLGELALSGALRPVQGVLPAALAARKAGRALLVPRANAEEASLASGLVVYAADHL
LEVAAHFNGVAPLAPFEAQGLLRQLLPYPDLAEVQGQVAAKRGLLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIHSVASQSPLEHWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GCIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPDQIQRYRGKLSGPLLDRIDLHLTVAREATALNAPLAG
SETTAQVAAQVAEARRIQLQRQGCANAFLDLSGLRSHCQLQAEDQQWLERACERLGLSLRAAHRILKVARTLADLQQHTA
IGRAHLAEALQYRPGSQGG

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1089239 ACL0K2_RS11305 WP_045160419.1 2480837..2482336(+) (comM) [Pseudomonas sp. YJ42]
ATGTCCCTTGCCATTGTTCATAGCCGCGCCCAGGTGGGCGTCGAGGCGCCCAGCGTCACCGTGGAAGCCCACCTGGCCAA
CGGCTTGCCCTCGCTGGCGCTGGTCGGACTGCCGGAGACCGCCGTCAAGGAAAGCAAGGATCGTGTGCGCAGCGCGATTC
TGACCTCCGACTTTGACTTTCCTGCCCGCCGTATAACCCTCAATCTGGCCCCGGCGGACTTGCCGAAAGACGGTGGCCGC
TTCGATCTGGCCATCGCCTTGGGTATTCTCGCGGCGAGCGGTCAGATTCCCCCGGACCGCCTCGATAGCCTCGAATGCCT
GGGCGAGCTGGCACTGTCTGGAGCGCTACGCCCGGTTCAGGGCGTTCTGCCCGCCGCACTGGCCGCACGCAAAGCCGGAC
GTGCTCTGCTGGTACCACGCGCCAATGCCGAGGAAGCCAGCCTGGCCTCTGGCCTGGTGGTCTACGCCGCCGATCATTTG
CTCGAGGTCGCAGCGCATTTCAATGGCGTCGCGCCTCTTGCGCCGTTCGAAGCCCAAGGTTTGCTGCGTCAACTGTTGCC
CTATCCCGACCTGGCCGAGGTGCAAGGCCAAGTTGCCGCCAAGCGCGGCCTGCTGGTCGCTGCGGCGGGCGCGCACAACC
TTTTGTTTTCCGGGCCGCCGGGCACCGGCAAGACGCTCCTCGCCAGCCGTCTTCCGGGCCTGCTACCGCCTCTGGAAGAG
CAGGAGGCGTTGGAAGTCGCGGCGATTCATTCGGTCGCCAGCCAGTCACCGCTCGAGCATTGGCCGCAGCGGCCTTTCCG
TCAGCCCCATCACAGTGCATCGGGACCGGCTCTGGTTGGCGGTGGTAGCCGACCGCGGCCGGGCGAAATCACCTTGGCGC
ACCAGGGCGTGTTGTTTCTCGATGAGCTGCCGGAATTCGATCGCAAAGTCCTGGAGGTGCTCCGCGAGCCACTGGAATCA
GGCTGCATCGTTATTGCCCGGGCACGGGACAAGGTGCGATTCCCGGCTCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCGAGCGGGCGCTGCCGCTGTTCACCCGATCAGATTCAGCGCTACCGCGGCAAGCTGT
CCGGGCCGTTGCTCGATCGTATCGACCTGCACCTCACCGTGGCACGCGAAGCCACGGCACTGAACGCACCACTGGCCGGC
AGCGAAACCACTGCACAGGTCGCGGCCCAGGTCGCCGAAGCGCGACGCATCCAGTTGCAGCGCCAAGGCTGCGCCAATGC
ATTCCTCGACCTCAGCGGTCTGCGCAGCCATTGCCAATTGCAAGCCGAGGACCAGCAATGGCTGGAACGCGCCTGCGAGC
GACTCGGACTTTCGCTGCGCGCCGCGCACCGGATCCTGAAAGTCGCGCGGACCCTGGCAGACCTGCAGCAGCACACGGCC
ATCGGCCGTGCGCACCTGGCCGAAGCCCTGCAGTACAGACCCGGCAGCCAGGGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D9ASY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.576

99.198

0.571
  comM Vibrio cholerae strain A1552

56.855

99.399

0.565
  comM Haemophilus influenzae Rd KW20

55.378

100

0.557
  comM Glaesserella parasuis strain SC1401

55.511

100

0.555
  comM Legionella pneumophila str. Paris

50.198

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.467

Multiple sequence alignment