Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACL0K2_RS11030 Genome accession   NZ_CP178378
Coordinates   2424712..2425776 (-) Length   354 a.a.
NCBI ID   WP_413044400.1    Uniprot ID   -
Organism   Pseudomonas sp. YJ42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2419712..2430776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL0K2_RS11005 (ACL0K2_11005) aroK 2420283..2420828 (-) 546 WP_239610208.1 shikimate kinase AroK -
  ACL0K2_RS11010 (ACL0K2_11010) pilQ 2420833..2422944 (-) 2112 WP_413044398.1 type IV pilus secretin PilQ Machinery gene
  ACL0K2_RS11015 (ACL0K2_11015) pilP 2422996..2423523 (-) 528 WP_413044399.1 type 4a pilus biogenesis lipoprotein PilP -
  ACL0K2_RS11020 (ACL0K2_11020) pilO 2423520..2424143 (-) 624 WP_045160491.1 type 4a pilus biogenesis protein PilO -
  ACL0K2_RS11025 (ACL0K2_11025) pilN 2424140..2424712 (-) 573 WP_045160490.1 type 4a pilus biogenesis protein PilN -
  ACL0K2_RS11030 (ACL0K2_11030) comM 2424712..2425776 (-) 1065 WP_413044400.1 pilus assembly protein PilM Machinery gene
  ACL0K2_RS11035 (ACL0K2_11035) - 2425961..2428399 (+) 2439 WP_413044401.1 penicillin-binding protein 1A -
  ACL0K2_RS11040 (ACL0K2_11040) - 2428577..2429845 (-) 1269 WP_045160487.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37691.12 Da        Isoelectric Point: 4.6227

>NTDB_id=1089237 ACL0K2_RS11030 WP_413044400.1 2424712..2425776(-) (comM) [Pseudomonas sp. YJ42]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYRVESFAVEPLPPNAVVEKNIAELDGVGQALSRLLAKAKTGVKSAAV
AVSGSAVITKSIEMDAGLSDDDLENQLKIEADQYIPYPLEEVAIDFEVQGPAARAPGRVEVLLAACRKENVEIREAALAL
AGLAAKVVDVEAYALERSFGLLAPQLGAGHDELTIALVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFHDVDYILLAGGTASIPGLDRLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1089237 ACL0K2_RS11030 WP_413044400.1 2424712..2425776(-) (comM) [Pseudomonas sp. YJ42]
GTGCTAGGGCTCTTCACTAAGAAAGCGAATACGCTGCTTGGGATCGACATCAGTTCGACGTCTGTCAAGCTGCTCGAATT
AAGCCGCTCAGGCTCCCGGTATCGGGTTGAGTCATTTGCGGTCGAGCCGCTTCCGCCGAACGCTGTGGTAGAAAAGAACA
TCGCTGAACTGGACGGTGTGGGCCAGGCGCTGTCTCGGTTGTTAGCTAAAGCGAAAACCGGTGTGAAATCCGCCGCAGTA
GCGGTTTCCGGTTCGGCGGTCATCACCAAGAGCATCGAAATGGACGCCGGGTTGAGCGACGACGACCTGGAAAATCAGCT
GAAGATCGAAGCGGATCAGTACATTCCTTACCCGCTGGAAGAAGTCGCTATCGACTTTGAAGTGCAGGGGCCGGCCGCTC
GCGCCCCGGGACGCGTCGAGGTGCTGTTGGCGGCGTGTCGCAAGGAAAACGTAGAGATTCGCGAAGCGGCTCTGGCCCTG
GCTGGACTGGCGGCCAAGGTTGTCGATGTCGAAGCCTATGCGCTGGAGCGTTCATTTGGTTTGCTAGCGCCCCAGCTGGG
TGCCGGTCACGACGAGCTGACCATTGCTCTGGTCGACATCGGTGCGACCATGACCACGCTGAGCGTGTTGCACAACGGCC
GCACGATCTATACCCGCGAACAGTTGTTCGGTGGGCGTCAGCTTACCGAAGAGATTCAGCGTCGCTACGGGCTATCGATG
GAAGAAGCTGGCCTTGCCAAAAAGCAAGGAGGCCTCCCAGACGACTATGACAGCGAAGTATTGCAGCCGTTCAAAGAAGC
GGTCGTTCAGCAGGTGTCGCGCTCGCTCCAGTTTTTCTTCGCCGCCGGGCAGTTCCATGACGTGGACTACATCCTTCTGG
CTGGCGGGACGGCATCGATTCCGGGGCTGGATCGGTTGATTCAGCAGAAAATCGGGACTCAGACTTTAGTCGCCAATCCG
TTTGCCGATATGGCGTTGAGTAGCAAGGTCAACGCTGGCGCGCTCGCCAGTGATGCGCCGTCCCTGATGATTGCCTGCGG
GTTGGCCTTGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.062

100

0.571
  pilM Acinetobacter baumannii D1279779

57.062

100

0.571
  comM Acinetobacter baylyi ADP1

53.672

100

0.537
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.469

Multiple sequence alignment