Detailed information NTG1088831

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACI766_RS28635
• Genome accession: NZ_CP178323
• Coordinates: 6143326..6144819 (+)
• Length: 497 a.a.
• NCBI ID: WP_003098248.1
• Uniprot ID: Q9HTR4
• Organism: Pseudomonas sp. DL
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 6138326..6149819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI766_RS28605	-	6138460..6139374 (-)	915	WP_003114348.1	fimbrial protein	-
ACI766_RS28610	sutA	6139798..6140115 (-)	318	WP_003098240.1	transcriptional regulator SutA	-
ACI766_RS28615	-	6140193..6140618 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
ACI766_RS28620	-	6140879..6142207 (-)	1329	WP_003098243.1	ammonium transporter	-
ACI766_RS28625	glnK	6142247..6142585 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
ACI766_RS28630	-	6143025..6143285 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
ACI766_RS28635	comM	6143326..6144819 (+)	1494	WP_003098248.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
ACI766_RS28640	betT	6144944..6146929 (+)	1986	WP_003096496.1	choline BCCT transporter BetT	-
ACI766_RS28645	pchP	6146972..6148021 (-)	1050	WP_003110458.1	phosphorylcholine phosphatase	-
ACI766_RS28650	-	6148172..6149089 (-)	918	WP_034046906.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53083.04 Da
• Isoelectric Point: 7.9587

>NTDB_id=1088831 ACI766_RS28635 WP_003098248.1 6143326..6144819(+) (comM) [Pseudomonas sp. DL]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide

• Length: 1494 bp

>NTDB_id=1088831 ACI766_RS28635 WP_003098248.1 6143326..6144819(+) (comM) [Pseudomonas sp. DL]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-492)

3D structure

• AlphaFold DB: Q9HTR4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	55.186	100	0.567
comM	Vibrio campbellii strain DS40M4	56.74	100	0.567
comM	Vibrio cholerae strain A1552	56.338	100	0.563
comM	Glaesserella parasuis strain SC1401	55.179	100	0.557
comM	Legionella pneumophila str. Paris	50.1	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.866	100	0.469