Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFCT9_RS10170 Genome accession   NZ_CP178241
Coordinates   2118046..2118564 (+) Length   172 a.a.
NCBI ID   WP_002480323.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2113046..2123564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS10155 argF 2115039..2116043 (-) 1005 WP_412519049.1 ornithine carbamoyltransferase -
  ACFCT9_RS10160 - 2116582..2117565 (+) 984 WP_412519051.1 thermonuclease family protein -
  ACFCT9_RS10165 rpsF 2117728..2118024 (+) 297 WP_412519052.1 30S ribosomal protein S6 -
  ACFCT9_RS10170 ssbA 2118046..2118564 (+) 519 WP_002480323.1 single-stranded DNA-binding protein Machinery gene
  ACFCT9_RS10175 rpsR 2118618..2118860 (+) 243 WP_002480324.1 30S ribosomal protein S18 -
  ACFCT9_RS10180 - 2119387..2119998 (+) 612 WP_412519054.1 hypothetical protein -
  ACFCT9_RS10185 - 2120310..2120897 (+) 588 WP_412519055.1 histidine phosphatase family protein -
  ACFCT9_RS10190 - 2120952..2122118 (-) 1167 WP_412519057.1 ArgE/DapE family deacylase -
  ACFCT9_RS10195 - 2122276..2122716 (+) 441 WP_412519059.1 carboxymuconolactone decarboxylase family protein -
  ACFCT9_RS10200 - 2122780..2123403 (-) 624 WP_412519061.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19044.65 Da        Isoelectric Point: 5.1953

>NTDB_id=1088629 ACFCT9_RS10170 WP_002480323.1 2118046..2118564(+) (ssbA) [Staphylococcus simulans strain PFJB-50N]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1088629 ACFCT9_RS10170 WP_002480323.1 2118046..2118564(+) (ssbA) [Staphylococcus simulans strain PFJB-50N]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTTATCAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGTAATTACTTATTTAAAGGTAGTCTTGCAGGCGTAGATGGTCGCTTACAATCACGC
AGTTATGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAATAATTCATCCAACGCTGGTCAATCAGATAATCCATTCGCAAATACGAAC
GGACCAATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment