Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | ACI6PM_RS25700 | Genome accession | NZ_CP178211 |
| Coordinates | 5542132..5543622 (+) | Length | 496 a.a. |
| NCBI ID | WP_024087897.1 | Uniprot ID | V9V727 |
| Organism | Pseudomonas asiatica strain Pa_16 | ||
| Function | require for natural transformation (predicted from homology) Unclear |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 5522010..5596202 | 5542132..5543622 | within | 0 |
Gene organization within MGE regions
Location: 5522010..5596202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6PM_RS25600 (ACI6PM_25600) | ppk1 | 5523471..5525711 (-) | 2241 | WP_013974735.1 | polyphosphate kinase 1 | - |
| ACI6PM_RS25605 (ACI6PM_25605) | - | 5525925..5526569 (+) | 645 | WP_015272245.1 | DedA family protein | - |
| ACI6PM_RS25610 (ACI6PM_25610) | - | 5527119..5527697 (-) | 579 | Protein_5021 | sterol desaturase family protein | - |
| ACI6PM_RS25615 (ACI6PM_25615) | elbB | 5527810..5528469 (+) | 660 | WP_015272247.1 | isoprenoid biosynthesis glyoxalase ElbB | - |
| ACI6PM_RS25620 (ACI6PM_25620) | - | 5528623..5529075 (-) | 453 | WP_013974739.1 | YaiI/YqxD family protein | - |
| ACI6PM_RS25625 (ACI6PM_25625) | - | 5529249..5532104 (+) | 2856 | WP_015272248.1 | class I adenylate cyclase | - |
| ACI6PM_RS25630 (ACI6PM_25630) | rnk | 5532220..5532630 (-) | 411 | WP_015272249.1 | nucleoside diphosphate kinase regulator | - |
| ACI6PM_RS25635 (ACI6PM_25635) | - | 5532777..5533001 (-) | 225 | WP_013974742.1 | DUF1289 domain-containing protein | - |
| ACI6PM_RS25640 (ACI6PM_25640) | cyaY | 5533003..5533335 (-) | 333 | WP_004375540.1 | iron donor protein CyaY | - |
| ACI6PM_RS25645 (ACI6PM_25645) | lptM | 5533669..5533884 (+) | 216 | WP_004375542.1 | LPS translocon maturation chaperone LptM | - |
| ACI6PM_RS25650 (ACI6PM_25650) | lysA | 5533894..5535141 (+) | 1248 | WP_015272250.1 | diaminopimelate decarboxylase | - |
| ACI6PM_RS25655 (ACI6PM_25655) | dapF | 5535146..5535976 (+) | 831 | WP_013974744.1 | diaminopimelate epimerase | - |
| ACI6PM_RS25660 (ACI6PM_25660) | - | 5535990..5536700 (+) | 711 | WP_015272252.1 | DUF484 family protein | - |
| ACI6PM_RS25665 (ACI6PM_25665) | xerC | 5536700..5537599 (+) | 900 | WP_015272253.1 | tyrosine recombinase XerC | - |
| ACI6PM_RS25670 (ACI6PM_25670) | - | 5537596..5538291 (+) | 696 | WP_013974747.1 | HAD family hydrolase | - |
| ACI6PM_RS25675 (ACI6PM_25675) | sutA | 5538472..5538801 (-) | 330 | WP_013974748.1 | transcriptional regulator SutA | - |
| ACI6PM_RS25680 (ACI6PM_25680) | - | 5539231..5540562 (-) | 1332 | WP_015272254.1 | ammonium transporter | - |
| ACI6PM_RS25685 (ACI6PM_25685) | glnK | 5540609..5540947 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| ACI6PM_RS25690 (ACI6PM_25690) | - | 5541349..5541615 (+) | 267 | WP_015272255.1 | accessory factor UbiK family protein | - |
| ACI6PM_RS25695 (ACI6PM_25695) | - | 5541616..5541969 (+) | 354 | WP_015272256.1 | gamma-glutamylcyclotransferase family protein | - |
| ACI6PM_RS25700 (ACI6PM_25700) | comM | 5542132..5543622 (+) | 1491 | WP_024087897.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| ACI6PM_RS25705 (ACI6PM_25705) | - | 5543845..5544213 (-) | 369 | WP_023662911.1 | response regulator transcription factor | - |
| ACI6PM_RS25710 (ACI6PM_25710) | - | 5544210..5545202 (-) | 993 | WP_100412827.1 | response regulator | - |
| ACI6PM_RS25715 (ACI6PM_25715) | - | 5545441..5550489 (+) | 5049 | WP_015272302.1 | ATP-binding sensor histidine kinase | - |
| ACI6PM_RS25720 (ACI6PM_25720) | ycaC | 5550544..5551170 (-) | 627 | WP_004375560.1 | isochorismate family cysteine hydrolase YcaC | - |
| ACI6PM_RS25725 (ACI6PM_25725) | - | 5551244..5551606 (-) | 363 | WP_015272303.1 | helix-turn-helix domain-containing protein | - |
| ACI6PM_RS25730 (ACI6PM_25730) | - | 5551787..5552761 (+) | 975 | WP_043936302.1 | GlxA family transcriptional regulator | - |
| ACI6PM_RS25735 (ACI6PM_25735) | - | 5553004..5554791 (+) | 1788 | WP_085721334.1 | monovalent cation:proton antiporter-2 (CPA2) family protein | - |
| ACI6PM_RS25740 (ACI6PM_25740) | - | 5555511..5555804 (+) | 294 | WP_015272306.1 | hypothetical protein | - |
| ACI6PM_RS25745 (ACI6PM_25745) | ycaC | 5555982..5556611 (-) | 630 | WP_013974760.1 | isochorismate family cysteine hydrolase YcaC | - |
| ACI6PM_RS25750 (ACI6PM_25750) | - | 5556892..5557803 (+) | 912 | WP_015272307.1 | LysR substrate-binding domain-containing protein | - |
| ACI6PM_RS25755 (ACI6PM_25755) | - | 5558007..5559269 (+) | 1263 | WP_412481512.1 | OprD family porin | - |
| ACI6PM_RS25760 (ACI6PM_25760) | - | 5559271..5560869 (+) | 1599 | WP_412481513.1 | MFS transporter | - |
| ACI6PM_RS25765 (ACI6PM_25765) | - | 5560957..5562798 (-) | 1842 | WP_015272310.1 | amidohydrolase | - |
| ACI6PM_RS25770 (ACI6PM_25770) | - | 5563113..5563931 (-) | 819 | WP_085721331.1 | alpha/beta fold hydrolase | - |
| ACI6PM_RS25775 (ACI6PM_25775) | - | 5563971..5564279 (-) | 309 | WP_015272312.1 | hypothetical protein | - |
| ACI6PM_RS25780 (ACI6PM_25780) | ycaC | 5564394..5565023 (-) | 630 | WP_015272313.1 | isochorismate family cysteine hydrolase YcaC | - |
| ACI6PM_RS25785 (ACI6PM_25785) | - | 5565344..5566771 (+) | 1428 | WP_054572018.1 | mechanosensitive ion channel family protein | - |
| ACI6PM_RS25790 (ACI6PM_25790) | - | 5566874..5568160 (-) | 1287 | WP_013974769.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACI6PM_RS25795 (ACI6PM_25795) | - | 5568284..5569774 (-) | 1491 | WP_003253547.1 | aldehyde dehydrogenase family protein | - |
| ACI6PM_RS25800 (ACI6PM_25800) | - | 5569911..5570801 (+) | 891 | WP_015272315.1 | LysR family transcriptional regulator | - |
| ACI6PM_RS25805 (ACI6PM_25805) | - | 5571023..5572408 (+) | 1386 | WP_137137766.1 | VOC family protein | - |
| ACI6PM_RS25810 (ACI6PM_25810) | - | 5572603..5573529 (-) | 927 | WP_015272317.1 | LysR substrate-binding domain-containing protein | - |
| ACI6PM_RS25815 (ACI6PM_25815) | - | 5573686..5575074 (+) | 1389 | WP_015272318.1 | NorM family multidrug efflux MATE transporter | - |
| ACI6PM_RS25820 (ACI6PM_25820) | - | 5575198..5576862 (-) | 1665 | WP_054572020.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| ACI6PM_RS25825 (ACI6PM_25825) | rep | 5577116..5579125 (+) | 2010 | WP_015272320.1 | DNA helicase Rep | - |
| ACI6PM_RS25830 (ACI6PM_25830) | - | 5579191..5579763 (+) | 573 | WP_009683322.1 | xanthine phosphoribosyltransferase | - |
| ACI6PM_RS25835 (ACI6PM_25835) | - | 5579874..5581736 (-) | 1863 | WP_054572021.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| ACI6PM_RS25840 (ACI6PM_25840) | - | 5582012..5582416 (-) | 405 | WP_038408395.1 | c-type cytochrome | - |
| ACI6PM_RS25845 (ACI6PM_25845) | - | 5582571..5583119 (-) | 549 | WP_013974777.1 | cupin domain-containing protein | - |
| ACI6PM_RS25850 (ACI6PM_25850) | alr | 5583229..5584302 (-) | 1074 | WP_015272322.1 | alanine racemase | - |
| ACI6PM_RS25855 (ACI6PM_25855) | dadA | 5584451..5585755 (-) | 1305 | WP_013974779.1 | D-amino acid dehydrogenase | - |
| ACI6PM_RS25860 (ACI6PM_25860) | dadR | 5585912..5586400 (+) | 489 | WP_003258963.1 | transcriptional regulator DadR | - |
| ACI6PM_RS25865 (ACI6PM_25865) | - | 5586403..5586756 (-) | 354 | WP_013974780.1 | YkgJ family cysteine cluster protein | - |
| ACI6PM_RS25870 (ACI6PM_25870) | - | 5586956..5588248 (+) | 1293 | WP_015272323.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACI6PM_RS25875 (ACI6PM_25875) | - | 5588404..5588634 (-) | 231 | WP_015272324.1 | DUF1127 domain-containing protein | - |
| ACI6PM_RS25880 (ACI6PM_25880) | - | 5588813..5590243 (+) | 1431 | WP_162491226.1 | PLP-dependent aminotransferase family protein | - |
| ACI6PM_RS25885 (ACI6PM_25885) | - | 5590304..5591860 (+) | 1557 | WP_015272325.1 | phospholipase D family protein | - |
| ACI6PM_RS25890 (ACI6PM_25890) | - | 5591982..5593121 (-) | 1140 | WP_015272326.1 | MFS transporter | - |
| ACI6PM_RS25895 (ACI6PM_25895) | - | 5593252..5594745 (-) | 1494 | WP_412481514.1 | aldehyde dehydrogenase | - |
| ACI6PM_RS25900 (ACI6PM_25900) | - | 5594942..5595301 (+) | 360 | WP_003258971.1 | cupin domain-containing protein | - |
| ACI6PM_RS25905 (ACI6PM_25905) | rpmG | 5595372..5595527 (-) | 156 | WP_003253507.1 | 50S ribosomal protein L33 | - |
| ACI6PM_RS25910 (ACI6PM_25910) | rpmB | 5595538..5595774 (-) | 237 | WP_003258972.1 | 50S ribosomal protein L28 | - |
Sequence
Protein
Download Length: 496 a.a. Molecular weight: 52782.49 Da Isoelectric Point: 7.5221
>NTDB_id=1088260 ACI6PM_RS25700 WP_024087897.1 5542132..5543622(+) (comM) [Pseudomonas asiatica strain Pa_16]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRCHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGNQAI
GRAHLAEALQYRPGSS
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRCHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGNQAI
GRAHLAEALQYRPGSS
Nucleotide
Download Length: 1491 bp
>NTDB_id=1088260 ACI6PM_RS25700 WP_024087897.1 5542132..5543622(+) (comM) [Pseudomonas asiatica strain Pa_16]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGTCC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGTAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCATTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGTGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCTGCCATTGTGGCTTGGCGGCGGCGGACCAGGCCTGGTTGGAGGGGGCCTGTGAGCGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAACCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGTCC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGTAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCATTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGTGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCTGCCATTGTGGCTTGGCGGCGGCGGACCAGGCCTGGTTGGAGGGGGCCTGTGAGCGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAACCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Haemophilus influenzae Rd KW20 |
55.4 |
100 |
0.558 |
| comM | Vibrio campbellii strain DS40M4 |
55.556 |
99.798 |
0.554 |
| comM | Vibrio cholerae strain A1552 |
55.152 |
99.798 |
0.55 |
| comM | Glaesserella parasuis strain SC1401 |
53.892 |
100 |
0.544 |
| comM | Legionella pneumophila str. Paris |
49.194 |
100 |
0.492 |
| comM | Legionella pneumophila strain ERS1305867 |
49.194 |
100 |
0.492 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.813 |
100 |
0.474 |