Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ABWW24_RS03390 Genome accession   NZ_AP031330
Coordinates   588185..589072 (-) Length   295 a.a.
NCBI ID   WP_353300694.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583185..594072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW24_RS03375 (TthTF25_06580) - 584126..584680 (-) 555 WP_353300922.1 shikimate kinase -
  ABWW24_RS03380 (TthTF25_06590) aroC 584705..585856 (-) 1152 WP_353300692.1 chorismate synthase -
  ABWW24_RS03385 (TthTF25_06600) pilQ 585915..588188 (-) 2274 WP_353300693.1 secretin N-terminal domain-containing protein Machinery gene
  ABWW24_RS03390 (TthTF25_06610) pilW 588185..589072 (-) 888 WP_353300694.1 competence protein Machinery gene
  ABWW24_RS03395 (TthTF25_06620) pilO 589069..589650 (-) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABWW24_RS03400 (TthTF25_06630) pilN 589640..590263 (-) 624 WP_011173433.1 competence protein Machinery gene
  ABWW24_RS03405 (TthTF25_06640) pilM 590256..591389 (-) 1134 WP_353300695.1 type IV pilus assembly protein PilM Machinery gene
  ABWW24_RS03410 (TthTF25_06650) - 591526..592530 (-) 1005 WP_244340638.1 homoisocitrate dehydrogenase -
  ABWW24_RS03415 (TthTF25_06660) - 592585..593076 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 30202.70 Da        Isoelectric Point: 4.5062

>NTDB_id=108753 ABWW24_RS03390 WP_353300694.1 588185..589072(-) (pilW) [Thermus thermophilus strain TF25]
MKNAWQRLKEAWENLPRSTKILLAALLLVGGVALWYVGLYLPAQVAETPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEQAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPI
PGTSGALPAPKVLSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGPV
SVAILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 888 bp        

>NTDB_id=108753 ABWW24_RS03390 WP_353300694.1 588185..589072(-) (pilW) [Thermus thermophilus strain TF25]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGATCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAACGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCAATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAAGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGCAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCA
CGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATC
CCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAAAC
GCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAAGGGGCGGAGGCGGAGG
CCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTG
AGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGT
GCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTG
GCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

96.271

100

0.963

Multiple sequence alignment