Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLD71_RS02400 | Genome accession | NZ_CP177241 |
| Coordinates | 499798..500412 (-) | Length | 204 a.a. |
| NCBI ID | WP_137675451.1 | Uniprot ID | - |
| Organism | Agarivorans sp. DSG3-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 494798..505412
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLD71_RS02380 (ACLD71_02380) | - | 495562..496482 (-) | 921 | WP_137673913.1 | THxN family PEP-CTERM protein | - |
| ACLD71_RS02385 (ACLD71_02385) | - | 496922..497824 (-) | 903 | WP_411992796.1 | THxN family PEP-CTERM protein | - |
| ACLD71_RS02390 (ACLD71_02390) | - | 497979..498848 (-) | 870 | WP_137674044.1 | ThiF family adenylyltransferase | - |
| ACLD71_RS02395 (ACLD71_02395) | - | 498969..499721 (+) | 753 | WP_411992798.1 | S1 family peptidase | - |
| ACLD71_RS02400 (ACLD71_02400) | ssb | 499798..500412 (-) | 615 | WP_137675451.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLD71_RS02405 (ACLD71_02405) | - | 500465..501835 (-) | 1371 | WP_411992800.1 | MFS transporter | - |
| ACLD71_RS02410 (ACLD71_02410) | uvrA | 502001..504829 (+) | 2829 | WP_411992802.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 22164.45 Da Isoelectric Point: 5.2358
>NTDB_id=1086362 ACLD71_RS02400 WP_137675451.1 499798..500412(-) (ssb) [Agarivorans sp. DSG3-1]
MATRGINKVILVGNLGQDPEVRFMPNGGAVANITIATSESWRDKQSGEQKERTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRQGGGQGQSMGGAPQQQNNWGGQQQAAPQAAPTAQQGGFQQQAP
QQQAAPQQGGYQQQAKPAAPQQAPQQAAPQFNEPPMDFDDDIPF
MATRGINKVILVGNLGQDPEVRFMPNGGAVANITIATSESWRDKQSGEQKERTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRQGGGQGQSMGGAPQQQNNWGGQQQAAPQAAPTAQQGGFQQQAP
QQQAAPQQGGYQQQAKPAAPQQAPQQAAPQFNEPPMDFDDDIPF
Nucleotide
Download Length: 615 bp
>NTDB_id=1086362 ACLD71_RS02400 WP_137675451.1 499798..500412(-) (ssb) [Agarivorans sp. DSG3-1]
ATGGCCACTCGGGGCATTAATAAAGTAATTTTGGTTGGTAACTTAGGACAAGATCCTGAAGTACGTTTTATGCCAAACGG
CGGGGCCGTCGCCAATATTACTATTGCTACTTCAGAAAGCTGGAGAGACAAGCAAAGTGGTGAACAGAAAGAACGCACAG
AATGGCACCGCGTAGTGTTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTTAAAAAAGGTTCACAGGTTTATATT
GAAGGCCAATTACAAACGCGTAAGTGGCAAGACCAAAATGGTCAAGACCGCTACTCAACAGAGGTAGTTGTTCAAGGCTT
TAATGGCGTAATGCAAATGCTAGGTGGTCGCCAAGGCGGTGGTCAAGGTCAAAGCATGGGTGGAGCGCCACAGCAGCAAA
ATAACTGGGGTGGCCAACAGCAAGCAGCTCCACAGGCTGCTCCTACCGCACAACAAGGTGGTTTCCAGCAGCAAGCGCCG
CAACAACAGGCTGCGCCTCAGCAAGGTGGCTATCAGCAACAAGCTAAGCCTGCTGCTCCGCAGCAAGCGCCTCAACAAGC
TGCACCACAGTTTAACGAGCCGCCAATGGATTTTGACGACGATATCCCCTTTTAG
ATGGCCACTCGGGGCATTAATAAAGTAATTTTGGTTGGTAACTTAGGACAAGATCCTGAAGTACGTTTTATGCCAAACGG
CGGGGCCGTCGCCAATATTACTATTGCTACTTCAGAAAGCTGGAGAGACAAGCAAAGTGGTGAACAGAAAGAACGCACAG
AATGGCACCGCGTAGTGTTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTTAAAAAAGGTTCACAGGTTTATATT
GAAGGCCAATTACAAACGCGTAAGTGGCAAGACCAAAATGGTCAAGACCGCTACTCAACAGAGGTAGTTGTTCAAGGCTT
TAATGGCGTAATGCAAATGCTAGGTGGTCGCCAAGGCGGTGGTCAAGGTCAAAGCATGGGTGGAGCGCCACAGCAGCAAA
ATAACTGGGGTGGCCAACAGCAAGCAGCTCCACAGGCTGCTCCTACCGCACAACAAGGTGGTTTCCAGCAGCAAGCGCCG
CAACAACAGGCTGCGCCTCAGCAAGGTGGCTATCAGCAACAAGCTAAGCCTGCTGCTCCGCAGCAAGCGCCTCAACAAGC
TGCACCACAGTTTAACGAGCCGCCAATGGATTTTGACGACGATATCCCCTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.476 |
100 |
0.681 |
| ssb | Glaesserella parasuis strain SC1401 |
51.471 |
100 |
0.515 |
| ssb | Neisseria gonorrhoeae MS11 |
46.734 |
97.549 |
0.456 |
| ssb | Neisseria meningitidis MC58 |
43.719 |
97.549 |
0.426 |