Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACK3BE_RS27035 | Genome accession | NZ_CP177237 |
| Coordinates | 5910033..5910905 (+) | Length | 290 a.a. |
| NCBI ID | WP_311096686.1 | Uniprot ID | - |
| Organism | Pseudomonas mandelii strain VR4' HT30-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5905033..5915905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK3BE_RS27010 (ACK3BE_27010) | - | 5905232..5905528 (+) | 297 | WP_282411970.1 | DUF2845 domain-containing protein | - |
| ACK3BE_RS27015 (ACK3BE_27015) | - | 5905812..5906165 (-) | 354 | WP_010467586.1 | BON domain-containing protein | - |
| ACK3BE_RS27020 (ACK3BE_27020) | pilA | 5906478..5906885 (-) | 408 | WP_010467585.1 | pilin | Machinery gene |
| ACK3BE_RS27025 (ACK3BE_27025) | pilB | 5907111..5908811 (+) | 1701 | WP_083375734.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK3BE_RS27030 (ACK3BE_27030) | pilC | 5908814..5910031 (+) | 1218 | WP_010467583.1 | type II secretion system F family protein | Machinery gene |
| ACK3BE_RS27035 (ACK3BE_27035) | pilD | 5910033..5910905 (+) | 873 | WP_311096686.1 | A24 family peptidase | Machinery gene |
| ACK3BE_RS27040 (ACK3BE_27040) | coaE | 5910902..5911525 (+) | 624 | WP_102593899.1 | dephospho-CoA kinase | - |
| ACK3BE_RS27045 (ACK3BE_27045) | yacG | 5911522..5911722 (+) | 201 | WP_077750267.1 | DNA gyrase inhibitor YacG | - |
| ACK3BE_RS27050 (ACK3BE_27050) | - | 5911726..5911941 (-) | 216 | WP_010467577.1 | hypothetical protein | - |
| ACK3BE_RS27055 (ACK3BE_27055) | - | 5912005..5912694 (-) | 690 | WP_083375730.1 | energy-coupling factor ABC transporter permease | - |
| ACK3BE_RS27060 (ACK3BE_27060) | - | 5912691..5913158 (-) | 468 | WP_010467572.1 | hypothetical protein | - |
| ACK3BE_RS27065 (ACK3BE_27065) | - | 5913288..5913914 (+) | 627 | WP_007970534.1 | DUF1780 domain-containing protein | - |
| ACK3BE_RS27070 (ACK3BE_27070) | - | 5913911..5914438 (+) | 528 | WP_010467568.1 | MOSC domain-containing protein | - |
| ACK3BE_RS27075 (ACK3BE_27075) | - | 5914490..5914663 (+) | 174 | WP_008028730.1 | DUF3094 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32137.51 Da Isoelectric Point: 8.2577
>NTDB_id=1086340 ACK3BE_RS27035 WP_311096686.1 5910033..5910905(+) (pilD) [Pseudomonas mandelii strain VR4' HT30-3]
MPLNEVLILYPLVFVVIALAVGLLVGSFLNVVVWRLPKMLQREWRLQAHDVLGVPPEAPGPAYNLMLPHSHCPQCDHRIR
AWENIPLLSYLFLRGRCSNCAAPISKRYPLTELACGLLSGFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNAQTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK
MPLNEVLILYPLVFVVIALAVGLLVGSFLNVVVWRLPKMLQREWRLQAHDVLGVPPEAPGPAYNLMLPHSHCPQCDHRIR
AWENIPLLSYLFLRGRCSNCAAPISKRYPLTELACGLLSGFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNAQTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1086340 ACK3BE_RS27035 WP_311096686.1 5910033..5910905(+) (pilD) [Pseudomonas mandelii strain VR4' HT30-3]
ATGCCCTTGAACGAAGTCCTGATCCTCTACCCGCTGGTGTTCGTGGTCATCGCCTTGGCAGTCGGCCTGCTGGTAGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCCAACGCGAATGGCGGCTGCAAGCCCATGACGTGTTGGGTG
TTCCGCCCGAGGCACCGGGCCCCGCCTACAACTTGATGCTGCCTCATTCCCACTGCCCGCAGTGCGACCATCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATCTGTTTTTACGGGGTCGATGCTCGAACTGCGCCGCGCCAATCAGCAAACG
TTATCCGCTGACTGAACTGGCCTGCGGTCTGCTCTCGGGGTTTATCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGTCTAATCGACGCCGAGCACCAACTGCTGCCGGATGTATTGGTG
CTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCACTGCATGAGGCATTGTGGGGCGCAGT
GGCCGGTTATATGACGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGTTACTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATATTGCCGTTGACCATTCTGCTGTCATCGCTCGTGGGG
GCCATCATCGGGGTGATTTTGCTGCGACTGCGCAACGCGCAAACCTCGACTCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCCTTGAACGAAGTCCTGATCCTCTACCCGCTGGTGTTCGTGGTCATCGCCTTGGCAGTCGGCCTGCTGGTAGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCCAACGCGAATGGCGGCTGCAAGCCCATGACGTGTTGGGTG
TTCCGCCCGAGGCACCGGGCCCCGCCTACAACTTGATGCTGCCTCATTCCCACTGCCCGCAGTGCGACCATCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATCTGTTTTTACGGGGTCGATGCTCGAACTGCGCCGCGCCAATCAGCAAACG
TTATCCGCTGACTGAACTGGCCTGCGGTCTGCTCTCGGGGTTTATCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGTCTAATCGACGCCGAGCACCAACTGCTGCCGGATGTATTGGTG
CTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCACTGCATGAGGCATTGTGGGGCGCAGT
GGCCGGTTATATGACGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGTTACTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATATTGCCGTTGACCATTCTGCTGTCATCGCTCGTGGGG
GCCATCATCGGGGTGATTTTGCTGCGACTGCGCAACGCGCAAACCTCGACTCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.982 |
98.276 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
52.837 |
97.241 |
0.514 |
| pilD | Acinetobacter baumannii D1279779 |
49.635 |
94.483 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
49.635 |
94.483 |
0.469 |
| pilD | Neisseria gonorrhoeae MS11 |
47.778 |
93.103 |
0.445 |