Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACJWMC_RS07455 Genome accession   NZ_CP177181
Coordinates   1617911..1619881 (-) Length   656 a.a.
NCBI ID   WP_037598293.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD1919     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612911..1624881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS07435 amiF 1613414..1614343 (-) 930 WP_037598289.1 ATP-binding cassette domain-containing protein Regulator
  ACJWMC_RS07440 amiE 1614336..1615421 (-) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  ACJWMC_RS07445 amiD 1615431..1616357 (-) 927 WP_002891436.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMC_RS07450 amiC 1616357..1617850 (-) 1494 WP_002891437.1 ABC transporter permease Regulator
  ACJWMC_RS07455 amiA3 1617911..1619881 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMC_RS07460 amiA 1620063..1622033 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  ACJWMC_RS07465 pta 1622269..1623252 (-) 984 WP_037598296.1 phosphate acetyltransferase -
  ACJWMC_RS07470 - 1623268..1624164 (-) 897 WP_002891441.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72953.30 Da        Isoelectric Point: 5.0663

>NTDB_id=1085954 ACJWMC_RS07455 WP_037598293.1 1617911..1619881(-) (amiA3) [Streptococcus salivarius strain MRD1919]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTFNYVYNADPETLDYLISNKGSTIDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHYDGVKLSFFDGSDQEAQVRNFTDGAYSQARIYPTGSNFASVKKQYKDNIFYTQPSADIVGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSINFSINRESYSAQINGEEGGVLAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDMPVDQTAKTKVARAQSLKQSVEETLGKENVVVDLNQMSQDDLLN
ATLSAPNAAAEDWDITDSVAWAPDYEDPSTYLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVENAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1085954 ACJWMC_RS07455 WP_037598293.1 1617911..1619881(-) (amiA3) [Streptococcus salivarius strain MRD1919]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCGTCAAAATC
AAACACTTCAAGCAATACTTTTAACTATGTTTATAATGCTGATCCTGAGACATTGGACTACCTTATTTCCAATAAGGGTT
CAACAATTGATGCTGTGACAAATGGTGTCGATGGTCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACATACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATACTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTATGATGGGGTGAAATTGTCATTTTTCGATGGCTCTGATCAAGAGGCTCAAGTCCGTAATTTCACTGATGG
CGCCTATAGCCAAGCACGTATTTATCCAACAGGGTCGAACTTCGCCTCAGTAAAAAAACAATATAAAGATAATATTTTCT
ATACACAACCATCTGCTGATATTGTTGGTGTTGGTGTTAATATTGATCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGCCAATCTATTAACTTCTCAATTAATCGTGA
GTCATACTCAGCTCAAATTAATGGAGAAGAAGGGGGAGTTCTAGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTTGGTGATTTGGTAACTGAAAAGATGGCTTCTTACGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAACAAGGCTAAGGAAGCCCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTAGATATGCCAGTTGACCAAACAGCAAAGACAAAGGTGGCTCGTGCACAGTCTTTGA
AACAATCTGTTGAAGAGACACTCGGTAAAGAAAATGTTGTGGTTGACCTCAACCAAATGTCTCAAGATGACCTGTTGAAC
GCAACTCTTTCTGCTCCTAATGCAGCAGCAGAAGACTGGGATATTACTGACTCAGTTGCTTGGGCACCTGACTATGAAGA
CCCATCAACATACCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGAAAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTCAACAAGGG
GGCTGCGCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

74.125

100

0.742
  amiA3 Streptococcus thermophilus LMG 18311

73.973

100

0.741
  amiA Streptococcus salivarius strain HSISS4

73.78

100

0.738

Multiple sequence alignment