Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACJWMC_RS07435 Genome accession   NZ_CP177181
Coordinates   1613414..1614343 (-) Length   309 a.a.
NCBI ID   WP_037598289.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD1919     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608414..1619343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS07410 - 1609699..1610517 (-) 819 WP_002891428.1 Cof-type HAD-IIB family hydrolase -
  ACJWMC_RS07415 - 1610510..1611304 (-) 795 WP_002891429.1 HAD-IIB family hydrolase -
  ACJWMC_RS07420 - 1611486..1611863 (+) 378 WP_002891430.1 GntR family transcriptional regulator -
  ACJWMC_RS07425 - 1611868..1612566 (+) 699 WP_002891431.1 ABC transporter ATP-binding protein -
  ACJWMC_RS07430 - 1612578..1613363 (+) 786 WP_037598283.1 hypothetical protein -
  ACJWMC_RS07435 amiF 1613414..1614343 (-) 930 WP_037598289.1 ATP-binding cassette domain-containing protein Regulator
  ACJWMC_RS07440 amiE 1614336..1615421 (-) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  ACJWMC_RS07445 amiD 1615431..1616357 (-) 927 WP_002891436.1 oligopeptide ABC transporter permease OppC Regulator
  ACJWMC_RS07450 amiC 1616357..1617850 (-) 1494 WP_002891437.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35019.13 Da        Isoelectric Point: 6.8971

>NTDB_id=1085950 ACJWMC_RS07435 WP_037598289.1 1613414..1614343(-) (amiF) [Streptococcus salivarius strain MRD1919]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSIDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1085950 ACJWMC_RS07435 WP_037598289.1 1613414..1614343(-) (amiF) [Streptococcus salivarius strain MRD1919]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATTGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGTTTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAAGTTTATGATCCAAACCAACACGACTATTCGATTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTTGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.676

100

0.997
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974

Multiple sequence alignment